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build-sourmash-index
build-sourmash-index PublicBuild a database of sourmash signatures from a genomic library.
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sra-demo-benchmark
sra-demo-benchmark PublicA demo workflow showing download, extraction, and compression of sequences from SRA.
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shotgun-qc-nf
shotgun-qc-nf Public archiveA nextflow pipeline definition for generating quality control reports for shotgun metagenomic sequences.
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bracken-nf
bracken-nf Public archiveMap metagenomic reads to operational taxonomic units (OTUs) using kraken2 and estimate bacterial abundances with bracken.
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kraken2-humgut
kraken2-humgut Public archiveBuild a kraken2 database and bracken mappings from the HumGut genome clusters.
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Comparison_of_DA_microbiome_methods
Comparison_of_DA_microbiome_methods Public archiveForked from nearinj/Comparison_of_DA_microbiome_methods
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- sra-demo-benchmark Public
A demo workflow showing download, extraction, and compression of sequences from SRA.
UnseenBio/sra-demo-benchmark’s past year of commit activity - coptr Public archive Forked from tyjo/coptr
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
UnseenBio/coptr’s past year of commit activity - Comparison_of_DA_microbiome_methods Public archive Forked from nearinj/Comparison_of_DA_microbiome_methods
UnseenBio/Comparison_of_DA_microbiome_methods’s past year of commit activity - kraken2-humgut Public archive
Build a kraken2 database and bracken mappings from the HumGut genome clusters.
UnseenBio/kraken2-humgut’s past year of commit activity - bracken-nf Public archive
Map metagenomic reads to operational taxonomic units (OTUs) using kraken2 and estimate bacterial abundances with bracken.
UnseenBio/bracken-nf’s past year of commit activity - shotgun-qc-nf Public archive
A nextflow pipeline definition for generating quality control reports for shotgun metagenomic sequences.
UnseenBio/shotgun-qc-nf’s past year of commit activity
