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Releases: UofS-Pulse-Binfo/genotypes_loader

Version 7.x-1.1

20 Dec 15:55
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This release includes the following improvements:

  • Full module documentation available at https://genotypes-loader.readthedocs.io/en/latest/
  • Ability to use multiple organisms. Specifically, you can specify the organism of the genome assembly and then a number of germplasm organisms in the samples file.
  • Added support for the PostgreSQL COPY function for genotypic data to improve speed drastically.
  • This module now adds all cvterms used by it (Thanks @bradfordcondon) and includes a variety of enhancements to make it more generic and easier to use.
  • Improved error checking throughout the module.
  • Removed ND Genotypes dependency.
  • Support Tripal 3.
  • Multiple Bug Fixes.
  • Started work on automated testing.

First official release!

14 Nov 17:33
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This is the first official release for the genotypes loader. There are still some assumptions made with ontology terms (see README), with plans to make it more generic in the future.

This loader has been tested with ~45000 SNPs x 11 samples, and took approx. 4 hours to complete. Active development is ongoing to drastically increase the efficiency.