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@UofS-Pulse-Binfo

Pulse Bioinformatics, University of Saskatchewan

Our group has a strong focus on creating flexible, re-usable open-source software during the course of our work.

Pinned

  1. analyzedphenotypes analyzedphenotypes Public

    Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.

    PHP 1

  2. nd_genotypes nd_genotypes Public

    Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.

    PHP 4 1

  3. genotypes_loader genotypes_loader Public

    A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.

    PHP 1 2

  4. chado_custom_search chado_custom_search Public

    Provides custom search functionality for those who don't wish to use Drupal Views.

    PHP

  5. tripal_qtl tripal_qtl Public

    Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.

    PHP

  6. vcf_filter vcf_filter Public

    Form interface so users can custom filter existing VCF files and export in a variety of formats.

    PHP 1

Repositories

39 results for all repositories written in All sorted by last updated
Showing 10 of 39 repositories
  • lims_rawseq Public

    Drupal/Tripal: Provides a simple node type for recording Sequencing Run details.

    PHP 0 0 3 0 Updated Mar 14, 2024
  • vcf_filter Public

    Form interface so users can custom filter existing VCF files and export in a variety of formats.

    PHP 1 GPL-2.0 0 13 0 Updated Feb 12, 2024
  • kp_searches Public

    Provides custom search functionality for KnowPulse.

    PHP 0 GPL-2.0 0 0 0 Updated Jan 26, 2024
  • rawphenotypes Public

    A Tripal module for storing raw phenotypic data. Specifically meant to help researchers contribute raw data, visualize summaries and download for further analysis.

    PHP 2 2 23 3 Updated Aug 28, 2023
  • scripts Public

    Scripts and one-liners used by our group. Saved here so they are not forgotten...

    Perl 0 GPL-2.0 0 0 0 Updated Aug 8, 2023
  • uofspb_germplasm Public

    Drupal/Tripal: Provide support for germplasm.

    PHP 0 GPL-3.0 0 2 0 Updated May 12, 2023
  • genotypes_loader Public

    A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.

    PHP 1 GPL-2.0 2 10 0 Updated Apr 21, 2023
  • PHP 0 0 4 3 Updated Apr 21, 2023
  • analyzedphenotypes Public

    Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.

    PHP 0 GPL-2.0 1 16 0 Updated Apr 20, 2023
  • tripal_bibtex Public

    A BibTEX importer for Tripal Publications.

    PHP 2 GPL-3.0 2 2 1 Updated Apr 19, 2023

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