Added needed vcf to requriements to fix build

VDBWRAIR · Apr 14, 2015 · 333b058 · 333b058
1 parent 9f69092
commit 333b058
Show file tree

Hide file tree

Showing 16 changed files with 1,265 additions and 1,048 deletions.
diff --git a/contig-0.fastq b/contig-0.fastq
diff --git a/contig-1000000.fastq b/contig-1000000.fastq
diff --git a/contig-2000000.fastq b/contig-2000000.fastq
diff --git a/foo-0.fastq b/foo-0.fastq
@@ -0,0 +1,8 @@
+@id0
+ATCG
++
+0000
+@id1
+ATCG
++
+1111
diff --git a/foo-1.fastq b/foo-1.fastq
@@ -0,0 +1,4 @@
+@id1
+ATCG
++
+1111
diff --git a/foo-2.fastq b/foo-2.fastq
@@ -0,0 +1,4 @@
+@id2
+ACTG
++
+2222
diff --git a/tests/expected/tmp/expected_fooCTG3.fastq → foo-3.fastq b/tests/expected/tmp/expected_fooCTG3.fastq → foo-3.fastq
@@ -1,8 +1,8 @@
-id3
-GTCA
+@id2
+ACTG
 +
 2222
-id4 
-GACT
+@id3
+GTCA
 +
 3333
diff --git a/foo-4.fastq b/foo-4.fastq
@@ -0,0 +1,12 @@
+@id3
+GTCA
++
+3333
+@id5
+GACT
++
+5555
+@id4
+GACT
++
+4444
diff --git a/requirements.txt b/requirements.txt
@@ -4,3 +4,4 @@ biopython
 pandas
 docopt
 schema
+pyvcf
diff --git a/tests/expected/tmp/F.fastq b/tests/expected/tmp/F.fastq
diff --git a/tests/expected/tmp/expected_fooCTG0.fastq b/tests/expected/tmp/expected_fooCTG0.fastq
diff --git a/tests/expected/tmp/expected_fooCTG1.fastq b/tests/expected/tmp/expected_fooCTG1.fastq
diff --git a/tests/expected/tmp/expected_fooCTG2.fastq b/tests/expected/tmp/expected_fooCTG2.fastq
diff --git a/tests/expected/tmp/expected_fooCTG4.fastq b/tests/expected/tmp/expected_fooCTG4.fastq
diff --git a/tests/expected/tmp/expectedfoo1.fastq b/tests/expected/tmp/expectedfoo1.fastq
diff --git a/tests/expected/tmp/gene1.fasta b/tests/expected/tmp/gene1.fasta