generated from VEuPathDB/example-jaxrs-container-service
-
Notifications
You must be signed in to change notification settings - Fork 0
/
docker-compose.yml
125 lines (108 loc) · 3.85 KB
/
docker-compose.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
version: "3.5"
services:
# # # # # # # # # # # # # # # # # # # #
# #
# Dataset Handlers #
# #
# # # # # # # # # # # # # # # # # # # #
# BIOM form handler
biom-handler:
image: veupathdb/user-dataset-handler-biom:${BIOME_HANDLER_TAG:-latest}
networks:
- internal
- monitoring-ext
labels:
- "com.centurylinklabs.watchtower.enable=${BIOME_HANDLER_WATCHTOWER:-false}"
- "traefik.enable=false"
- "prometheus-scrape.enabled=true"
# Gene list form handler
gene-list-handler:
image: veupathdb/user-dataset-handler-gene-list:${GENE_LIST_HANDLER_TAG:-latest}
networks:
- internal
- monitoring-ext
labels:
- "com.centurylinklabs.watchtower.enable=${GENE_LIST_HANDLER_WATCHTOWER:-false}"
- "traefik.enable=false"
- "prometheus-scrape.enabled=true"
isasimple-handler:
image: veupathdb/user-dataset-handler-isasimple:${ISASIMPLE_HANDLER_TAG:-latest}
networks:
- internal
- monitoring-ext
labels:
- "com.centurylinklabs.watchtower.enable=${ISASIMPLE_HANDLER_WATCHTOWER:-false}"
- "traefik.enable=false"
- "prometheus-scrape.enabled=true"
# # # # # # # # # # # # # # # # # # # #
# #
# Import Service #
# #
# # # # # # # # # # # # # # # # # # # #
# Datastore
postgres:
image: veupathdb/user-dataset-import-datastore:${POSTGRES_TAG:-latest}
volumes:
- pg-data:/var/lib/postgresql/data
environment:
- POSTGRES_PASSWORD=${POSTGRES_PASSWORD}
networks:
- internal
labels:
- "com.centurylinklabs.watchtower.enable=${POSTGRES_WATCHTOWER:-false}"
- "traefik.enable=false"
# Import Service
importer:
image: veupathdb/user-dataset-import-service:${IMPORTER_TAG:-latest}
networks:
- internal
- traefik
- monitoring-ext
depends_on:
- postgres
- biom-handler
environment:
# Server
SERVER_PORT: ${SERVER_PORT:-80}
# iRODS Connection Info
IRODS_HOST: ${IRODS_HOST}
IRODS_PORT: ${IRODS_PORT}
IRODS_USER: ${IRODS_USER}
IRODS_PASS: ${IRODS_PASS}
IRODS_ZONE: ${IRODS_ZONE}
IRODS_RESOURCE: ${IRODS_RESOURCE}
# User token salt
AUTH_SECRET_KEY: ${AUTH_SECRET_KEY}
# Account DB Connection Info
ACCT_DB_USER: ${ACCT_DB_USER}
ACCT_DB_PASS: ${ACCT_DB_PASS}
ACCT_DB_TNS_NAME: ${ACCT_DB_TNS_NAME}
LDAP_SERVER: ${LDAP_SERVER}
ORACLE_BASE_DN: ${ORACLE_BASE_DN}
# Postgres settings
DATASTORE_PASS: ${POSTGRES_PASSWORD}
command: >-
sh -c "while ! nc -z ${DB_HOST:-postgres} ${DB_PORT:-5432}; do
echo 'waiting for postgres';
sleep 1;
done;
java -jar /service.jar"
labels:
- "com.centurylinklabs.watchtower.enable=${IMPORTER_WATCHTOWER:-false}"
- "traefik.http.routers.${TRAEFIK_ROUTER:-udis-dev}.rule=Host(`${TRAEFIK_HOST:-udis-dev.local.apidb.org}`)"
- "traefik.http.routers.${TRAEFIK_ROUTER:-udis-dev}.tls=true"
- "traefik.http.routers.${TRAEFIK_ROUTER:-udis-dev}.entrypoints=${TRAEFIK_ENTRYPOINTS:-local}"
- "traefik.http.services.${TRAEFIK_ROUTER:-udis-dev}.loadbalancer.server.port=${SERVICE_PORT:-80}"
- "traefik.http.services.${TRAEFIK_ROUTER:-udis-dev}.loadbalancer.passhostheader=${TRAEFIK_PASSHOSTHEADER:-false}"
- "traefik.docker.network=traefik"
- "prometheus-scrape.enabled=true"
volumes:
pg-data:
networks:
external:
internal:
external: false
traefik:
external: true
monitoring-ext:
external: true