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Nextflow config update (autoMounts, envWhitelist) #18

Merged
merged 9 commits into from
Jun 28, 2021
Merged

Nextflow config update (autoMounts, envWhitelist) #18

merged 9 commits into from
Jun 28, 2021

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Cecilia-Sensalari
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lohausr
lohausr reviewed Jun 15, 2021
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Cecilia-Sensalari commented Jun 17, 2021 •
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Update of Nextflow configuration file fields.

  • autoMounts: new field added to allow users to run the pipeline from any directory in the cluster and not only from their home
  • envWhitelist: more details about NSLOTS (variable defining cores on SGE cluster)
  • removed parallelization settings in the configuration file for three Nextflow processes that don't need it

@Cecilia-Sensalari Cecilia-Sensalari merged commit 1614688 into master Jun 28, 2021
@Cecilia-Sensalari Cecilia-Sensalari deleted the nextflow_config_update branch July 2, 2021 13:53
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