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User-defined filename/path for expert config file #37

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merged 9 commits into from
Mar 24, 2022

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  • Before this PR, the expert configuration file had to be called config_expert.txt and had to be positioned in the launching directory of the command line; it was then automatically detected and used. If such file was not present, then ksrates used the default expert parameters.
  • This PR adds more flexibility: the user can now define their own name/path for the expert configuration file. Both in the Nextflow command line and in the ksrates command line this is done by adding parameter --expert followed by the file name/path. Note that if --expert is not given, config_expert.txt is still automatically detected in the launching folder and used; and if there is no expert file at all, the default parameters still apply.

@Cecilia-Sensalari Cecilia-Sensalari merged commit bfbb623 into master Mar 24, 2022
@Cecilia-Sensalari Cecilia-Sensalari deleted the expert_config branch March 24, 2022 18:18
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