Merge branch '1.0.x' into 'master'

CHANGELOG.md

@@ -20,6 +20,13 @@ Behavior changes:
 Bugfixes:
 * Fix an issue identifying Debian packages when a file's in two packages
 * Fix Python error `Mixing iteration and read methods would lose data`
+* Fix reprounzip info showing some numbers as 0 instead of hiding them in non-verbose mode
+
+Enhancements:
+* New GUI for reprounzip, allowing one to unpack without using the command-line
+* Add filters to remove some common files types from packed files (.pyc) or detected input files (.py, .so, ...)
+* Add JSON output format to `reprounzip info`
+* Allow using the Virtualbox display to reproduce X11-enabled experiments
 
 1.0.7 (2016-08-22)
 ------------------
@@ -37,7 +44,7 @@ Enhancements:
 (reprounzip-vistrails didn't change)
 
 Bugfixes:
-* Fixes error using Docker with`--enable-x11` on Python 3
+* Fixes error using Docker with `--enable-x11` on Python 3
 
 Enhancements:
 * `docker run` gets a `--detach` command, to keep the container running (useful for starting servers on remote machines)

README.md

@@ -1,11 +1,11 @@
 [![Build Status](https://travis-ci.org/ViDA-NYU/reprozip.svg?branch=master)]
 (https://travis-ci.org/ViDA-NYU/reprozip)
 [![Coverage Status]
-(http://codecov.io/github/ViDA-NYU/reprozip/coverage.svg?branch=master)]
-(http://codecov.io/github/ViDA-NYU/reprozip?branch=master)
+(https://codecov.io/github/ViDA-NYU/reprozip/coverage.svg?branch=master)]
+(https://codecov.io/github/ViDA-NYU/reprozip?branch=master)
 [![Code Health](https://landscape.io/github/ViDA-NYU/reprozip/master/landscape.png)](https://landscape.io/github/ViDA-NYU/reprozip/master)
 [![Documentation Status](https://readthedocs.org/projects/reprozip/badge/?version=latest)]
-(http://reprozip.readthedocs.io/en/latest/)
+(https://reprozip.readthedocs.io/en/latest/)
 [![Matrix](https://remram44.github.io/matrix-appservice-gitter-twisted/img/matrix-badge.svg)](https://vector.im/beta/#/room/#reprozip:matrix.org)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.60654.svg)](https://doi.org/10.5281/zenodo.60654)
 
@@ -139,20 +139,22 @@ to our [documentation][docs].
 ReproZip is currently being developed at [NYU][nyu]. The team includes:
 
 * [Fernando Chirigati][fc]
+* [Juliana Freire][jf]
 * [Rémi Rampin][rr]
 * [Dennis Shasha][ds]
-* [Juliana Freire][jf]
+* [Vicky Steeves][vs]
 
-[vagrant]: http://www.vagrantup.com/
+[vagrant]: https://www.vagrantup.com/
 [docker]: https://www.docker.com/
-[docs]: http://reprozip.readthedocs.io/
-[web]: http://vida-nyu.github.io/reprozip/
+[docs]: https://reprozip.readthedocs.io/
+[web]: https://vida-nyu.github.io/reprozip/
 [pz]: https://pypi.python.org/pypi/reprozip
 [puz]: https://pypi.python.org/pypi/reprounzip
 [puzd]: https://pypi.python.org/pypi/reprounzip-docker
 [puzv]: https://pypi.python.org/pypi/reprounzip-vagrant
-[fc]: http://vgc.poly.edu/~fchirigati/
-[rr]: http://remram.fr/
-[jf]: http://vgc.poly.edu/~juliana/
+[fc]: https://vgc.poly.edu/~fchirigati/
+[jf]: https://vgc.poly.edu/~juliana/
+[rr]: https://remram.fr/
 [ds]: http://cs.nyu.edu/shasha/
+[vs]: http://vickysteeves.com/
 [nyu]: http://engineering.nyu.edu/

reprounzip-docker/README.rst

@@ -1,7 +1,7 @@
 ReproZip
 ========
 
-`ReproZip <http://vida-nyu.github.io/reprozip/>`__ is a tool aimed at simplifying the process of creating reproducible
+`ReproZip <https://vida-nyu.github.io/reprozip/>`__ is a tool aimed at simplifying the process of creating reproducible
 experiments from command-line executions, a frequently-used common denominator
 in computational science. It tracks operating system calls and creates a package
 that contains all the binaries, files and dependencies required to run a given
@@ -24,12 +24,13 @@ for other components and plugins.
 Additional Information
 ----------------------
 
-For more detailed information, please refer to our `website <http://vida-nyu.github.io/reprozip/>`_, as well as to
-our `documentation <http://reprozip.readthedocs.io/>`_.
+For more detailed information, please refer to our `website <https://vida-nyu.github.io/reprozip/>`_, as well as to
+our `documentation <https://reprozip.readthedocs.io/>`_.
 
 ReproZip is currently being developed at `NYU <http://engineering.nyu.edu/>`_. The team includes:
 
-* `Fernando Chirigati <http://vgc.poly.edu/~fchirigati/>`_
-* `Remi Rampin <http://remram.fr/>`_
+* `Fernando Chirigati <https://vgc.poly.edu/~fchirigati/>`_
+* `Juliana Freire <https://vgc.poly.edu/~juliana/>`_
+* `Remi Rampin <https://remram.fr/>`_
 * `Dennis Shasha <http://cs.nyu.edu/shasha/>`_
-* `Juliana Freire <http://vgc.poly.edu/~juliana/>`_
+* `Vicky Steeves <http://vickysteeves.com/>`_

reprounzip-qt/README.rst

@@ -1,7 +1,7 @@
 ReproZip
 ========
 
-`ReproZip <http://vida-nyu.github.io/reprozip/>`__ is a tool aimed at simplifying the process of creating reproducible
+`ReproZip <https://vida-nyu.github.io/reprozip/>`__ is a tool aimed at simplifying the process of creating reproducible
 experiments from command-line executions, a frequently-used common denominator
 in computational science. It tracks operating system calls and creates a package
 that contains all the binaries, files and dependencies required to run a given
@@ -19,12 +19,13 @@ Please refer to `reprozip <https://pypi.python.org/pypi/reprozip>`__ and `reprou
 Additional Information
 ----------------------
 
-For more detailed information, please refer to our `website <http://vida-nyu.github.io/reprozip/>`_, as well as to
-our `documentation <http://reprozip.readthedocs.io/>`_.
+For more detailed information, please refer to our `website <https://vida-nyu.github.io/reprozip/>`_, as well as to
+our `documentation <https://reprozip.readthedocs.io/>`_.
 
 ReproZip is currently being developed at `NYU <http://engineering.nyu.edu/>`_. The team includes:
 
-* `Fernando Chirigati <http://vgc.poly.edu/~fchirigati/>`_
-* `Remi Rampin <http://remram.fr/>`_
+* `Fernando Chirigati <https://vgc.poly.edu/~fchirigati/>`_
+* `Juliana Freire <https://vgc.poly.edu/~juliana/>`_
+* `Remi Rampin <https://remram.fr/>`_
 * `Dennis Shasha <http://cs.nyu.edu/shasha/>`_
-* `Juliana Freire <http://vgc.poly.edu/~juliana/>`_
+* `Vicky Steeves <http://vickysteeves.com/>`_