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README.md

MT_Angle2Ablation_Workflow

Set of ImageJ and python scripts for the analysis of cortical microtubules orientation relative to an ablation site.

To get started, see the installation procedure and user guide.

Surfcut.ijm --> Cell_RoiMaker.ijm --> FibrilTool_Batch_Workflow.ijm --> Line_RoiMaker.ijm --> Angle2Ablation.ijm --> Stats_Angle2Ablation.ipynb

SurfCut: https://github.com/VergerLab/SurfCut2

FibrilTool_Batch_Workflow: https://github.com/VergerLab/FibrilTool_Batch_Workflow

Cell_RoiMaker, Line_RoiMaker.ijm, Angle2Ablation.ijm, Stats_Angle2Ablation.ipynb: This repo

To try the python notebook on binder: Binder

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Set of ImageJ and python scripts for the analysis of cortical microtubules orientation relative to an ablation site

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