Analysis pipeline used to analyze RNA-Seq data of DCs co-cultured with glioma GL261 cells, treated with either PS-PDT and MTX, and public availible datasets from TCGA, CGGA and GEO repositories.
The commands used to analyze the RNA-Seq data investigated in our manuscript can be found here. main file contains the basic commands to generate the results that were used for our study below:
Maria Vedunova, Victoria Turubanova, Olga Vershinina, Maria Savyuk, Iuliia Efimova, Robrecht Raedt, Tatiana Mishchenko, Anne Vral, Christian Vanhove, Daria Korsakova, Claus Bachert, Frauke Coppieters, Abhishek D. Garg, Patrizia Agostinis, Mikhail Ivanchenko, Olga Krysko, Dmitri V. Krysko: DC vaccines loaded with glioma killed by photodynamic therapy induce Th17 anti-tumor immunity and provide a 4-gene signature for glioma prognosis, 2022