docs/source/tutorials/discovery.ipynb

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      "source": [
        "# Discovery\n",
        "\n",
        "Required packages: vfb-connect and python-catmaid (pymaid & navis)"
      ]
    },
    {
      "cell_type": "code",
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      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
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            "  Obtaining dependency information for igraph!=0.10.0,!=0.10.1 from https://files.pythonhosted.org/packages/40/d6/7ae77b847631bedac753db9040ac1d230bd9405ad3a9d0b2ded66e1a8c15/igraph-0.10.8-cp37-cp37m-macosx_10_9_x86_64.whl.metadata\n",
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            "\u001b[?25hInstalling collected packages: ncollpyde, igraph, navis, python-catmaid\n",
            "  Attempting uninstall: ncollpyde\n",
            "    Found existing installation: ncollpyde 0.16.0\n",
            "    Uninstalling ncollpyde-0.16.0:\n",
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            "  Attempting uninstall: navis\n",
            "    Found existing installation: navis 0.6.0\n",
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            "      Successfully uninstalled navis-0.6.0\n",
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          ]
        }
      ],
      "source": [
        "!pip install vfb-connect --upgrade\n",
        "!pip install python-catmaid --upgrade"
      ]
    },
    {
      "cell_type": "markdown",
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        "cell_id": "00000-79bca113-6b64-4597-ad88-b519aea26aea",
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      "source": [
        "### How to find neurons across datasets\n",
        "\n",
        "VirtualFlyBrain integrates images and connectomics profiles of neurons from many sources.  It classifies and records their properties using a standard, queryable classification ([The Drosophila Anatomy Ontology](https://www.ebi.ac.uk/ols/ontologies/fbbt)). This standardises the names of neuron types across sources, so you don't need to worry about differences in nomenclature uses and supports queries for neurons by their classification. "
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 2,
      "metadata": {
        "cell_id": "00000-7a8aaee6-8107-4d3e-8262-7fdb8e78edbf",
        "deepnote_cell_type": "code",
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        "execution_millis": 6091,
        "execution_start": 1614738274096,
        "output_cleared": false,
        "source_hash": "558cc218",
        "tags": []
      },
      "outputs": [
        {
          "name": "stderr",
          "output_type": "stream",
          "text": [
            "INFO  : Global CATMAID instance set. Caching is ON. (pymaid)\n"
          ]
        },
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Server is running CATMAID version 2020.02.15-102-gce1dee4\n"
          ]
        }
      ],
      "source": [
        "# Import libs and initialise API objects\n",
        "from vfb_connect.cross_server_tools import VfbConnect\n",
        "import pandas as pd\n",
        "vc = VfbConnect()\n",
        "\n",
        "import pymaid\n",
        "import navis\n",
        "\n",
        "navis.set_pbars(jupyter=False)\n",
        "pymaid.set_pbars(jupyter=False)\n",
        "\n",
        "# Connect to the VFB CATMAID server hosting the FAFB data\n",
        "rm = pymaid.connect_catmaid(server=\"https://fafb.catmaid.virtualflybrain.org/\", api_token=None, max_threads=10)\n",
        "\n",
        "# Test call to see if connection works \n",
        "print(f'Server is running CATMAID version {rm.catmaid_version}')\n"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "cell_id": "00001-3d466554-95ec-42b9-af26-4d0c9eee3e2c",
        "deepnote_cell_type": "markdown",
        "tags": []
      },
      "source": [
        "### Finds neurons by type (classification) across datasets\n",
        "\n",
        "We can use the `vc.get_instances` method in combination with the name of a neuron type on VFB to find individual neurons from multiple sources.\n",
        "\n",
        "Use the search tool on [VFB](http://virtualflybrain.org) to find neuron types by name or synonym:\n",
        "\n",
        "<img src=\"https://user-images.githubusercontent.com/112839/109564687-535c9380-7ad9-11eb-80e9-5a5bc21cd915.png\" width=30% height=30%>\n",
        "<img src=\"https://user-images.githubusercontent.com/112839/109565128-eac1e680-7ad9-11eb-9649-1ec55a298a1b.png\" width=30% height=30%>\n",
        "\n",
        "Use either the full name or the Symbol to query for neurons:"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 3,
      "metadata": {
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      "outputs": [
        {
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              "      <th>0</th>\n",
              "      <td>DSKMP1A(PVM02)_L (FlyEM-HB:1260833150)</td>\n",
              "      <td>1260833150</td>\n",
              "      <td>VFB_jrchjti3</td>\n",
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              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>FBbt_00048999</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1260833150</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>DSKMP3_R (FlyEM-HB:327937328)</td>\n",
              "      <td>327937328</td>\n",
              "      <td>VFB_jrchjti6</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>FBbt_00048999</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>327937328</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>DSKMP3_R (FlyEM-HB:328559607)</td>\n",
              "      <td>328559607</td>\n",
              "      <td>VFB_jrchjti7</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>FBbt_00048999</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>328559607</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>DSKMP1A_R (FlyEM-HB:1135837629)</td>\n",
              "      <td>1135837629</td>\n",
              "      <td>VFB_jrchjti2</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>FBbt_00048999</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1135837629</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>DSKMP1B_R (FlyEM-HB:1352077058)</td>\n",
              "      <td>1352077058</td>\n",
              "      <td>VFB_jrchjti4</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>FBbt_00048999</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1352077058</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>5</th>\n",
              "      <td>DSKMP1B(PVM02)_L (FlyEM-HB:1011184205)</td>\n",
              "      <td>1011184205</td>\n",
              "      <td>VFB_jrchjti5</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>FBbt_00048999</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1011184205</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "</div>"
            ],
            "text/plain": [
              "                                    label      symbol            id  \\\n",
              "0  DSKMP1A(PVM02)_L (FlyEM-HB:1260833150)  1260833150  VFB_jrchjti3   \n",
              "1           DSKMP3_R (FlyEM-HB:327937328)   327937328  VFB_jrchjti6   \n",
              "2           DSKMP3_R (FlyEM-HB:328559607)   328559607  VFB_jrchjti7   \n",
              "3         DSKMP1A_R (FlyEM-HB:1135837629)  1135837629  VFB_jrchjti2   \n",
              "4         DSKMP1B_R (FlyEM-HB:1352077058)  1352077058  VFB_jrchjti4   \n",
              "5  DSKMP1B(PVM02)_L (FlyEM-HB:1011184205)  1011184205  VFB_jrchjti5   \n",
              "\n",
              "                                                tags  \\\n",
              "0  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "1  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "2  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "3  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "4  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "5  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "\n",
              "                parents_label     parents_id                     data_source  \\\n",
              "0  adult Drosulfakinin neuron  FBbt_00048999  neuprint_JRC_Hemibrain_1point1   \n",
              "1  adult Drosulfakinin neuron  FBbt_00048999  neuprint_JRC_Hemibrain_1point1   \n",
              "2  adult Drosulfakinin neuron  FBbt_00048999  neuprint_JRC_Hemibrain_1point1   \n",
              "3  adult Drosulfakinin neuron  FBbt_00048999  neuprint_JRC_Hemibrain_1point1   \n",
              "4  adult Drosulfakinin neuron  FBbt_00048999  neuprint_JRC_Hemibrain_1point1   \n",
              "5  adult Drosulfakinin neuron  FBbt_00048999  neuprint_JRC_Hemibrain_1point1   \n",
              "\n",
              "    accession                          templates                dataset  \\\n",
              "0  1260833150  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "1   327937328  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "2   328559607  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "3  1135837629  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "4  1352077058  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "5  1011184205  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "\n",
              "                                             license  \n",
              "0  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "1  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "2  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "3  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "4  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "5  https://creativecommons.org/licenses/by/4.0/le...  "
            ]
          },
          "execution_count": 3,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "DA3adPN = vc.get_instances(\"adult Drosulfakinin neuron\", summary=True)\n",
        "pd.DataFrame.from_records(DA3adPN)"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {
        "cell_id": "00004-d350500b-89e9-4a83-9add-bb45e436dc1f",
        "deepnote_cell_type": "markdown",
        "tags": []
      },
      "source": [
        "### Find neurons by location\n",
        "\n",
        "We can use the same method to search for neurons by location, using simple queries."
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 4,
      "metadata": {
        "cell_id": "00004-dcc17021-330f-4898-877c-cf190a55c379",
        "deepnote_cell_type": "code",
        "deepnote_to_be_reexecuted": false,
        "execution_millis": 1991,
        "execution_start": 1614738280577,
        "output_cleared": false,
        "source_hash": "1e03ca3a",
        "tags": []
      },
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Running query: FBbt:00005106 that RO:0002131 some FBbt:00003934\n",
            "Query URL: http://owl.virtualflybrain.org/kbs/vfb/instances?object=FBbt%3A00005106+that+RO%3A0002131+some+FBbt%3A00003934&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False\n",
            "Query results: 159\n"
          ]
        },
        {
          "data": {
            "text/html": [
              "<div>\n",
              "<style scoped>\n",
              "    .dataframe tbody tr th:only-of-type {\n",
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              "\n",
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              "    }\n",
              "\n",
              "    .dataframe thead th {\n",
              "        text-align: right;\n",
              "    }\n",
              "</style>\n",
              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>label</th>\n",
              "      <th>symbol</th>\n",
              "      <th>id</th>\n",
              "      <th>tags</th>\n",
              "      <th>parents_label</th>\n",
              "      <th>parents_id</th>\n",
              "      <th>data_source</th>\n",
              "      <th>accession</th>\n",
              "      <th>templates</th>\n",
              "      <th>dataset</th>\n",
              "      <th>license</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>ORN_DA1_R (FlyEM-HB:1703682799)</td>\n",
              "      <td>1703682799</td>\n",
              "      <td>VFB_jrchk15e</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Chemosensory_system|...</td>\n",
              "      <td>adult olfactory receptor neuron Or67d</td>\n",
              "      <td>FBbt_00067031</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1703682799</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>ORN_DL4_R (FlyEM-HB:1671271059)</td>\n",
              "      <td>1671271059</td>\n",
              "      <td>VFB_jrchk1km</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Chemosensory_system|...</td>\n",
              "      <td>adult olfactory receptor neuron Or49a/85f</td>\n",
              "      <td>FBbt_00067055</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1671271059</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>ORN_DA1_R (FlyEM-HB:1735054607)</td>\n",
              "      <td>1735054607</td>\n",
              "      <td>VFB_jrchk13v</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Chemosensory_system|...</td>\n",
              "      <td>adult olfactory receptor neuron Or67d</td>\n",
              "      <td>FBbt_00067031</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1735054607</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>v2LN35_R (FlyEM-HB:1733056086)</td>\n",
              "      <td>1733056086</td>\n",
              "      <td>VFB_jrchk8ew</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron v2LN35</td>\n",
              "      <td>FBbt_20003766</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1733056086</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595)</td>\n",
              "      <td>5813032595</td>\n",
              "      <td>VFB_jrchk8bd</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813032595</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "</div>"
            ],
            "text/plain": [
              "                                       label      symbol            id  \\\n",
              "0            ORN_DA1_R (FlyEM-HB:1703682799)  1703682799  VFB_jrchk15e   \n",
              "1            ORN_DL4_R (FlyEM-HB:1671271059)  1671271059  VFB_jrchk1km   \n",
              "2            ORN_DA1_R (FlyEM-HB:1735054607)  1735054607  VFB_jrchk13v   \n",
              "3             v2LN35_R (FlyEM-HB:1733056086)  1733056086  VFB_jrchk8ew   \n",
              "4  lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595)  5813032595  VFB_jrchk8bd   \n",
              "\n",
              "                                                tags  \\\n",
              "0  Entity|Adult|Anatomy|Cell|Chemosensory_system|...   \n",
              "1  Entity|Adult|Anatomy|Cell|Chemosensory_system|...   \n",
              "2  Entity|Adult|Anatomy|Cell|Chemosensory_system|...   \n",
              "3  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "4  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "\n",
              "                               parents_label     parents_id  \\\n",
              "0      adult olfactory receptor neuron Or67d  FBbt_00067031   \n",
              "1  adult olfactory receptor neuron Or49a/85f  FBbt_00067055   \n",
              "2      adult olfactory receptor neuron Or67d  FBbt_00067031   \n",
              "3    adult antennal lobe local neuron v2LN35  FBbt_20003766   \n",
              "4     adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "\n",
              "                      data_source   accession  \\\n",
              "0  neuprint_JRC_Hemibrain_1point1  1703682799   \n",
              "1  neuprint_JRC_Hemibrain_1point1  1671271059   \n",
              "2  neuprint_JRC_Hemibrain_1point1  1735054607   \n",
              "3  neuprint_JRC_Hemibrain_1point1  1733056086   \n",
              "4  neuprint_JRC_Hemibrain_1point1  5813032595   \n",
              "\n",
              "                           templates                dataset  \\\n",
              "0  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "1  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "2  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "3  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "4  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "\n",
              "                                             license  \n",
              "0  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "1  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "2  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "3  https://creativecommons.org/licenses/by/4.0/le...  \n",
              "4  https://creativecommons.org/licenses/by/4.0/le...  "
            ]
          },
          "execution_count": 4,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# Find neurons by location. The following query works across multiple data sources and both sides of the brain.  \n",
        "# Results may be incomplete & may include minor overlap inferred from low synapse counts\n",
        "\n",
        "neurons_in_DA3 = vc.get_instances(\"'neuron' that 'overlaps' some 'antennal lobe glomerulus DA3'\", summary=True)\n",
        "neurons_in_DA3_tab = pd.DataFrame.from_records(neurons_in_DA3)\n",
        "neurons_in_DA3_tab[0:5]\n"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 5,
      "metadata": {
        "cell_id": "00006-d14e7552-74de-47db-b0df-2cd4880e2d37",
        "deepnote_cell_type": "code",
        "deepnote_to_be_reexecuted": false,
        "execution_millis": 3176,
        "execution_start": 1614738282570,
        "output_cleared": false,
        "source_hash": "1d3a22e2",
        "tags": []
      },
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "Running query: FBbt:00007390 that RO:0002131 some FBbt:00003934\n",
            "Query URL: http://owl.virtualflybrain.org/kbs/vfb/instances?object=FBbt%3A00007390+that+RO%3A0002131+some+FBbt%3A00003934&prefixes=%7B%22FBbt%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FFBbt_%22%2C+%22RO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FRO_%22%2C+%22BFO%22%3A+%22http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBFO_%22%7D&direct=False\n",
            "Query results: 53\n"
          ]
        },
        {
          "data": {
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              "\n",
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              "        vertical-align: top;\n",
              "    }\n",
              "\n",
              "    .dataframe thead th {\n",
              "        text-align: right;\n",
              "    }\n",
              "</style>\n",
              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>label</th>\n",
              "      <th>symbol</th>\n",
              "      <th>id</th>\n",
              "      <th>tags</th>\n",
              "      <th>parents_label</th>\n",
              "      <th>parents_id</th>\n",
              "      <th>data_source</th>\n",
              "      <th>accession</th>\n",
              "      <th>templates</th>\n",
              "      <th>dataset</th>\n",
              "      <th>license</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>v2LN35_R (FlyEM-HB:1733056086)</td>\n",
              "      <td>1733056086</td>\n",
              "      <td>VFB_jrchk8ew</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron v2LN35</td>\n",
              "      <td>FBbt_20003766</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1733056086</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595)</td>\n",
              "      <td>5813032595</td>\n",
              "      <td>VFB_jrchk8bd</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813032595</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683)</td>\n",
              "      <td>1667251683</td>\n",
              "      <td>VFB_jrchk8bp</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1667251683</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>lLN2P_b(Patchy)_R (FlyEM-HB:1946178096)</td>\n",
              "      <td>1946178096</td>\n",
              "      <td>VFB_jrchk8au</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2P</td>\n",
              "      <td>FBbt_00049813</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1946178096</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941)</td>\n",
              "      <td>1762354941</td>\n",
              "      <td>VFB_jrchk8bg</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1762354941</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>5</th>\n",
              "      <td>lLN1_c_R (FlyEM-HB:1547454812)</td>\n",
              "      <td>1547454812</td>\n",
              "      <td>VFB_jrchk8ai</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1547454812</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>6</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:5813054622)</td>\n",
              "      <td>5813054622</td>\n",
              "      <td>VFB_jrchk8a8</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813054622</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>7</th>\n",
              "      <td>lLN2T_a(Tortuous)_R (FlyEM-HB:5813056598)</td>\n",
              "      <td>5813056598</td>\n",
              "      <td>VFB_jrchk8bi</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813056598</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>8</th>\n",
              "      <td>lLN16b_R (FlyEM-HB:1887168462)</td>\n",
              "      <td>1887168462</td>\n",
              "      <td>VFB_jrchk89w</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN16B</td>\n",
              "      <td>FBbt_20003752</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1887168462</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>9</th>\n",
              "      <td>lLN2T_e(Tortuous)_R (FlyEM-HB:1640922516)</td>\n",
              "      <td>1640922516</td>\n",
              "      <td>VFB_jrchk8bs</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1640922516</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>10</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:1642623277)</td>\n",
              "      <td>1642623277</td>\n",
              "      <td>VFB_jrchk8ad</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1642623277</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>11</th>\n",
              "      <td>lLN1_c_R (FlyEM-HB:1702651358)</td>\n",
              "      <td>1702651358</td>\n",
              "      <td>VFB_jrchk8aj</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1702651358</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>12</th>\n",
              "      <td>lLN2F_a(Full)_R (FlyEM-HB:1670287030)</td>\n",
              "      <td>1670287030</td>\n",
              "      <td>VFB_jrchk8al</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2F</td>\n",
              "      <td>FBbt_00049812</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1670287030</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>13</th>\n",
              "      <td>lLN1_a_R (FlyEM-HB:5813130064)</td>\n",
              "      <td>5813130064</td>\n",
              "      <td>VFB_jrchk8a4</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813130064</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>14</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:5813069055)</td>\n",
              "      <td>5813069055</td>\n",
              "      <td>VFB_jrchk8aa</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813069055</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>15</th>\n",
              "      <td>lLN2S(Star)_R (FlyEM-HB:1762359683)</td>\n",
              "      <td>1762359683</td>\n",
              "      <td>VFB_jrchk8bc</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2S</td>\n",
              "      <td>FBbt_00049815</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1762359683</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>16</th>\n",
              "      <td>lLN1_c_R (FlyEM-HB:1578826464)</td>\n",
              "      <td>1578826464</td>\n",
              "      <td>VFB_jrchk8ah</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1578826464</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>17</th>\n",
              "      <td>lLN2F_b(Full)_R (FlyEM-HB:5813024698)</td>\n",
              "      <td>5813024698</td>\n",
              "      <td>VFB_jrchk8an</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2F</td>\n",
              "      <td>FBbt_00049812</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813024698</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>18</th>\n",
              "      <td>lLN2R_b(Regional)_R (FlyEM-HB:5813076969)</td>\n",
              "      <td>5813076969</td>\n",
              "      <td>VFB_jrchk8b6</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2R</td>\n",
              "      <td>FBbt_00049814</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813076969</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>19</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:5813054777)</td>\n",
              "      <td>5813054777</td>\n",
              "      <td>VFB_jrchk8a9</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813054777</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>20</th>\n",
              "      <td>lLN2T_b(Tortuous)_R (FlyEM-HB:1640572741)</td>\n",
              "      <td>1640572741</td>\n",
              "      <td>VFB_jrchk8bl</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1640572741</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>21</th>\n",
              "      <td>lLN1_c_R (FlyEM-HB:5813062199)</td>\n",
              "      <td>5813062199</td>\n",
              "      <td>VFB_jrchk8af</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813062199</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>22</th>\n",
              "      <td>lLN16a_R (FlyEM-HB:1702318692)</td>\n",
              "      <td>1702318692</td>\n",
              "      <td>VFB_jrchk89t</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN16A</td>\n",
              "      <td>FBbt_20003751</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1702318692</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>23</th>\n",
              "      <td>lLN12a_R (FlyEM-HB:1826445251)</td>\n",
              "      <td>1826445251</td>\n",
              "      <td>VFB_jrchk89g</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN12A</td>\n",
              "      <td>FBbt_20003746</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1826445251</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>24</th>\n",
              "      <td>lLN1_c_R (FlyEM-HB:5813047691)</td>\n",
              "      <td>5813047691</td>\n",
              "      <td>VFB_jrchk8ae</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813047691</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>25</th>\n",
              "      <td>lLN2T_a(Tortuous)_R (FlyEM-HB:5813054726)</td>\n",
              "      <td>5813054726</td>\n",
              "      <td>VFB_jrchk8bh</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813054726</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>26</th>\n",
              "      <td>lLN2S(Star)_R (FlyEM-HB:1670627928)</td>\n",
              "      <td>1670627928</td>\n",
              "      <td>VFB_jrchk8bb</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2S</td>\n",
              "      <td>FBbt_00049815</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1670627928</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>27</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:5813078440)</td>\n",
              "      <td>5813078440</td>\n",
              "      <td>VFB_jrchk8a7</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813078440</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>28</th>\n",
              "      <td>lLN2R_b(Regional)_R (FlyEM-HB:1702305987)</td>\n",
              "      <td>1702305987</td>\n",
              "      <td>VFB_jrchk8b5</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2R</td>\n",
              "      <td>FBbt_00049814</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1702305987</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>29</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:5813054725)</td>\n",
              "      <td>5813054725</td>\n",
              "      <td>VFB_jrchk8ab</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813054725</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>30</th>\n",
              "      <td>lLN2S(Star)_R (FlyEM-HB:1732995501)</td>\n",
              "      <td>1732995501</td>\n",
              "      <td>VFB_jrchk8ba</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2S</td>\n",
              "      <td>FBbt_00049815</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1732995501</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>31</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:1640887603)</td>\n",
              "      <td>1640887603</td>\n",
              "      <td>VFB_jrchk8a6</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1640887603</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>32</th>\n",
              "      <td>lLN2P_a(Patchy)_R (FlyEM-HB:2041621893)</td>\n",
              "      <td>2041621893</td>\n",
              "      <td>VFB_jrchk8ao</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2P</td>\n",
              "      <td>FBbt_00049813</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>2041621893</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>33</th>\n",
              "      <td>lLN2S(Star)_R (FlyEM-HB:1702306037)</td>\n",
              "      <td>1702306037</td>\n",
              "      <td>VFB_jrchk8b7</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2S</td>\n",
              "      <td>FBbt_00049815</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1702306037</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>34</th>\n",
              "      <td>v2LN30_R (FlyEM-HB:1671620613)</td>\n",
              "      <td>1671620613</td>\n",
              "      <td>VFB_jrchk8e8</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron v2LN30</td>\n",
              "      <td>FBbt_20003756</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1671620613</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>35</th>\n",
              "      <td>lLN11_R (FlyEM-HB:2040301572)</td>\n",
              "      <td>2040301572</td>\n",
              "      <td>VFB_jrchk89d</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN11</td>\n",
              "      <td>FBbt_20003745</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>2040301572</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>36</th>\n",
              "      <td>lLN1_c_R (FlyEM-HB:1824101645)</td>\n",
              "      <td>1824101645</td>\n",
              "      <td>VFB_jrchk8ag</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1824101645</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>37</th>\n",
              "      <td>lLN2S(Star)_R (FlyEM-HB:1640922754)</td>\n",
              "      <td>1640922754</td>\n",
              "      <td>VFB_jrchk8b8</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2S</td>\n",
              "      <td>FBbt_00049815</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1640922754</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>38</th>\n",
              "      <td>lLN2S(Star)_R (FlyEM-HB:5813069085)</td>\n",
              "      <td>5813069085</td>\n",
              "      <td>VFB_jrchk8b9</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2S</td>\n",
              "      <td>FBbt_00049815</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813069085</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>39</th>\n",
              "      <td>lLN2P_c(Patchy)_R (FlyEM-HB:2105086391)</td>\n",
              "      <td>2105086391</td>\n",
              "      <td>VFB_jrchk8b0</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2P</td>\n",
              "      <td>FBbt_00049813</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>2105086391</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>40</th>\n",
              "      <td>lLN1_b_R (FlyEM-HB:1610530558)</td>\n",
              "      <td>1610530558</td>\n",
              "      <td>VFB_jrchk8ac</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN1</td>\n",
              "      <td>FBbt_00007395</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1610530558</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>41</th>\n",
              "      <td>lLN2T_e(Tortuous)_R (FlyEM-HB:1699974843)</td>\n",
              "      <td>1699974843</td>\n",
              "      <td>VFB_jrchk8br</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1699974843</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>42</th>\n",
              "      <td>lLN2T_a(Tortuous)_R (FlyEM-HB:5813055277)</td>\n",
              "      <td>5813055277</td>\n",
              "      <td>VFB_jrchk8bf</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813055277</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>43</th>\n",
              "      <td>lLN2F_a(Full)_R (FlyEM-HB:5901218894)</td>\n",
              "      <td>5901218894</td>\n",
              "      <td>VFB_jrchk8ak</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2F</td>\n",
              "      <td>FBbt_00049812</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5901218894</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>44</th>\n",
              "      <td>il3LN6_R (FlyEM-HB:5813018460)</td>\n",
              "      <td>5813018460</td>\n",
              "      <td>VFB_jrchk88v</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|GABAergic|Individual...</td>\n",
              "      <td>antennal lobe local neuron 6</td>\n",
              "      <td>FBbt_00047710</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813018460</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>45</th>\n",
              "      <td>lLN2T_c(Tortuous)_R (FlyEM-HB:1671292719)</td>\n",
              "      <td>1671292719</td>\n",
              "      <td>VFB_jrchk8bo</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1671292719</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>46</th>\n",
              "      <td>lLN2T_b(Tortuous)_R (FlyEM-HB:5813034493)</td>\n",
              "      <td>5813034493</td>\n",
              "      <td>VFB_jrchk8bm</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2T</td>\n",
              "      <td>FBbt_00049816</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813034493</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>47</th>\n",
              "      <td>l2LN18_R (FlyEM-HB:5813054773)</td>\n",
              "      <td>5813054773</td>\n",
              "      <td>VFB_jrchk891</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron l2LN18</td>\n",
              "      <td>FBbt_20003734</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813054773</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>48</th>\n",
              "      <td>lLN10_R (FlyEM-HB:1825789179)</td>\n",
              "      <td>1825789179</td>\n",
              "      <td>VFB_jrchk89b</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN10</td>\n",
              "      <td>FBbt_20003744</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1825789179</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>49</th>\n",
              "      <td>v2LN3b_R (FlyEM-HB:1888199872)</td>\n",
              "      <td>1888199872</td>\n",
              "      <td>VFB_jrchk8fg</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron v2LN3B</td>\n",
              "      <td>FBbt_20003755</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1888199872</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>50</th>\n",
              "      <td>v2LN3b_R (FlyEM-HB:5813034455)</td>\n",
              "      <td>5813034455</td>\n",
              "      <td>VFB_jrchk8ff</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron v2LN3B</td>\n",
              "      <td>FBbt_20003755</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>5813034455</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>51</th>\n",
              "      <td>lLN2F_b(Full)_R (FlyEM-HB:1640909284)</td>\n",
              "      <td>1640909284</td>\n",
              "      <td>VFB_jrchk8am</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN2F</td>\n",
              "      <td>FBbt_00049812</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1640909284</td>\n",
              "      <td>JRC_FlyEM_Hemibrain|JRC2018Unisex</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>52</th>\n",
              "      <td>lLN11_R (FlyEM-HB:1670278227)</td>\n",
              "      <td>1670278227</td>\n",
              "      <td>VFB_jrchk89e</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>adult antennal lobe local neuron lLN11</td>\n",
              "      <td>FBbt_20003745</td>\n",
              "      <td>neuprint_JRC_Hemibrain_1point1</td>\n",
              "      <td>1670278227</td>\n",
              "      <td>JRC2018Unisex|JRC_FlyEM_Hemibrain</td>\n",
              "      <td>Xu2020NeuronsV1point1</td>\n",
              "      <td>https://creativecommons.org/licenses/by/4.0/le...</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "</div>"
            ],
            "text/plain": [
              "                                        label      symbol            id  \\\n",
              "0              v2LN35_R (FlyEM-HB:1733056086)  1733056086  VFB_jrchk8ew   \n",
              "1   lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595)  5813032595  VFB_jrchk8bd   \n",
              "2   lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683)  1667251683  VFB_jrchk8bp   \n",
              "3     lLN2P_b(Patchy)_R (FlyEM-HB:1946178096)  1946178096  VFB_jrchk8au   \n",
              "4   lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941)  1762354941  VFB_jrchk8bg   \n",
              "5              lLN1_c_R (FlyEM-HB:1547454812)  1547454812  VFB_jrchk8ai   \n",
              "6              lLN1_b_R (FlyEM-HB:5813054622)  5813054622  VFB_jrchk8a8   \n",
              "7   lLN2T_a(Tortuous)_R (FlyEM-HB:5813056598)  5813056598  VFB_jrchk8bi   \n",
              "8              lLN16b_R (FlyEM-HB:1887168462)  1887168462  VFB_jrchk89w   \n",
              "9   lLN2T_e(Tortuous)_R (FlyEM-HB:1640922516)  1640922516  VFB_jrchk8bs   \n",
              "10             lLN1_b_R (FlyEM-HB:1642623277)  1642623277  VFB_jrchk8ad   \n",
              "11             lLN1_c_R (FlyEM-HB:1702651358)  1702651358  VFB_jrchk8aj   \n",
              "12      lLN2F_a(Full)_R (FlyEM-HB:1670287030)  1670287030  VFB_jrchk8al   \n",
              "13             lLN1_a_R (FlyEM-HB:5813130064)  5813130064  VFB_jrchk8a4   \n",
              "14             lLN1_b_R (FlyEM-HB:5813069055)  5813069055  VFB_jrchk8aa   \n",
              "15        lLN2S(Star)_R (FlyEM-HB:1762359683)  1762359683  VFB_jrchk8bc   \n",
              "16             lLN1_c_R (FlyEM-HB:1578826464)  1578826464  VFB_jrchk8ah   \n",
              "17      lLN2F_b(Full)_R (FlyEM-HB:5813024698)  5813024698  VFB_jrchk8an   \n",
              "18  lLN2R_b(Regional)_R (FlyEM-HB:5813076969)  5813076969  VFB_jrchk8b6   \n",
              "19             lLN1_b_R (FlyEM-HB:5813054777)  5813054777  VFB_jrchk8a9   \n",
              "20  lLN2T_b(Tortuous)_R (FlyEM-HB:1640572741)  1640572741  VFB_jrchk8bl   \n",
              "21             lLN1_c_R (FlyEM-HB:5813062199)  5813062199  VFB_jrchk8af   \n",
              "22             lLN16a_R (FlyEM-HB:1702318692)  1702318692  VFB_jrchk89t   \n",
              "23             lLN12a_R (FlyEM-HB:1826445251)  1826445251  VFB_jrchk89g   \n",
              "24             lLN1_c_R (FlyEM-HB:5813047691)  5813047691  VFB_jrchk8ae   \n",
              "25  lLN2T_a(Tortuous)_R (FlyEM-HB:5813054726)  5813054726  VFB_jrchk8bh   \n",
              "26        lLN2S(Star)_R (FlyEM-HB:1670627928)  1670627928  VFB_jrchk8bb   \n",
              "27             lLN1_b_R (FlyEM-HB:5813078440)  5813078440  VFB_jrchk8a7   \n",
              "28  lLN2R_b(Regional)_R (FlyEM-HB:1702305987)  1702305987  VFB_jrchk8b5   \n",
              "29             lLN1_b_R (FlyEM-HB:5813054725)  5813054725  VFB_jrchk8ab   \n",
              "30        lLN2S(Star)_R (FlyEM-HB:1732995501)  1732995501  VFB_jrchk8ba   \n",
              "31             lLN1_b_R (FlyEM-HB:1640887603)  1640887603  VFB_jrchk8a6   \n",
              "32    lLN2P_a(Patchy)_R (FlyEM-HB:2041621893)  2041621893  VFB_jrchk8ao   \n",
              "33        lLN2S(Star)_R (FlyEM-HB:1702306037)  1702306037  VFB_jrchk8b7   \n",
              "34             v2LN30_R (FlyEM-HB:1671620613)  1671620613  VFB_jrchk8e8   \n",
              "35              lLN11_R (FlyEM-HB:2040301572)  2040301572  VFB_jrchk89d   \n",
              "36             lLN1_c_R (FlyEM-HB:1824101645)  1824101645  VFB_jrchk8ag   \n",
              "37        lLN2S(Star)_R (FlyEM-HB:1640922754)  1640922754  VFB_jrchk8b8   \n",
              "38        lLN2S(Star)_R (FlyEM-HB:5813069085)  5813069085  VFB_jrchk8b9   \n",
              "39    lLN2P_c(Patchy)_R (FlyEM-HB:2105086391)  2105086391  VFB_jrchk8b0   \n",
              "40             lLN1_b_R (FlyEM-HB:1610530558)  1610530558  VFB_jrchk8ac   \n",
              "41  lLN2T_e(Tortuous)_R (FlyEM-HB:1699974843)  1699974843  VFB_jrchk8br   \n",
              "42  lLN2T_a(Tortuous)_R (FlyEM-HB:5813055277)  5813055277  VFB_jrchk8bf   \n",
              "43      lLN2F_a(Full)_R (FlyEM-HB:5901218894)  5901218894  VFB_jrchk8ak   \n",
              "44             il3LN6_R (FlyEM-HB:5813018460)  5813018460  VFB_jrchk88v   \n",
              "45  lLN2T_c(Tortuous)_R (FlyEM-HB:1671292719)  1671292719  VFB_jrchk8bo   \n",
              "46  lLN2T_b(Tortuous)_R (FlyEM-HB:5813034493)  5813034493  VFB_jrchk8bm   \n",
              "47             l2LN18_R (FlyEM-HB:5813054773)  5813054773  VFB_jrchk891   \n",
              "48              lLN10_R (FlyEM-HB:1825789179)  1825789179  VFB_jrchk89b   \n",
              "49             v2LN3b_R (FlyEM-HB:1888199872)  1888199872  VFB_jrchk8fg   \n",
              "50             v2LN3b_R (FlyEM-HB:5813034455)  5813034455  VFB_jrchk8ff   \n",
              "51      lLN2F_b(Full)_R (FlyEM-HB:1640909284)  1640909284  VFB_jrchk8am   \n",
              "52              lLN11_R (FlyEM-HB:1670278227)  1670278227  VFB_jrchk89e   \n",
              "\n",
              "                                                 tags  \\\n",
              "0   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "1   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "2   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "3   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "4   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "5   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "6   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "7   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "8   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "9   Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "10  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "11  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "12  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "13  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "14  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "15  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "16  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "17  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "18  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "19  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "20  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "21  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "22  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "23  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "24  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "25  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "26  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "27  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "28  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "29  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "30  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "31  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "32  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "33  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "34  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "35  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "36  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "37  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "38  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "39  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "40  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "41  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "42  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "43  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "44  Entity|Adult|Anatomy|Cell|GABAergic|Individual...   \n",
              "45  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "46  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "47  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "48  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "49  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "50  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "51  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "52  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "\n",
              "                              parents_label     parents_id  \\\n",
              "0   adult antennal lobe local neuron v2LN35  FBbt_20003766   \n",
              "1    adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "2    adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "3    adult antennal lobe local neuron lLN2P  FBbt_00049813   \n",
              "4    adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "5     adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "6     adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "7    adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "8   adult antennal lobe local neuron lLN16B  FBbt_20003752   \n",
              "9    adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "10    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "11    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "12   adult antennal lobe local neuron lLN2F  FBbt_00049812   \n",
              "13    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "14    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "15   adult antennal lobe local neuron lLN2S  FBbt_00049815   \n",
              "16    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "17   adult antennal lobe local neuron lLN2F  FBbt_00049812   \n",
              "18   adult antennal lobe local neuron lLN2R  FBbt_00049814   \n",
              "19    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "20   adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "21    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "22  adult antennal lobe local neuron lLN16A  FBbt_20003751   \n",
              "23  adult antennal lobe local neuron lLN12A  FBbt_20003746   \n",
              "24    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "25   adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "26   adult antennal lobe local neuron lLN2S  FBbt_00049815   \n",
              "27    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "28   adult antennal lobe local neuron lLN2R  FBbt_00049814   \n",
              "29    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "30   adult antennal lobe local neuron lLN2S  FBbt_00049815   \n",
              "31    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "32   adult antennal lobe local neuron lLN2P  FBbt_00049813   \n",
              "33   adult antennal lobe local neuron lLN2S  FBbt_00049815   \n",
              "34  adult antennal lobe local neuron v2LN30  FBbt_20003756   \n",
              "35   adult antennal lobe local neuron lLN11  FBbt_20003745   \n",
              "36    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "37   adult antennal lobe local neuron lLN2S  FBbt_00049815   \n",
              "38   adult antennal lobe local neuron lLN2S  FBbt_00049815   \n",
              "39   adult antennal lobe local neuron lLN2P  FBbt_00049813   \n",
              "40    adult antennal lobe local neuron lLN1  FBbt_00007395   \n",
              "41   adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "42   adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "43   adult antennal lobe local neuron lLN2F  FBbt_00049812   \n",
              "44             antennal lobe local neuron 6  FBbt_00047710   \n",
              "45   adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "46   adult antennal lobe local neuron lLN2T  FBbt_00049816   \n",
              "47  adult antennal lobe local neuron l2LN18  FBbt_20003734   \n",
              "48   adult antennal lobe local neuron lLN10  FBbt_20003744   \n",
              "49  adult antennal lobe local neuron v2LN3B  FBbt_20003755   \n",
              "50  adult antennal lobe local neuron v2LN3B  FBbt_20003755   \n",
              "51   adult antennal lobe local neuron lLN2F  FBbt_00049812   \n",
              "52   adult antennal lobe local neuron lLN11  FBbt_20003745   \n",
              "\n",
              "                       data_source   accession  \\\n",
              "0   neuprint_JRC_Hemibrain_1point1  1733056086   \n",
              "1   neuprint_JRC_Hemibrain_1point1  5813032595   \n",
              "2   neuprint_JRC_Hemibrain_1point1  1667251683   \n",
              "3   neuprint_JRC_Hemibrain_1point1  1946178096   \n",
              "4   neuprint_JRC_Hemibrain_1point1  1762354941   \n",
              "5   neuprint_JRC_Hemibrain_1point1  1547454812   \n",
              "6   neuprint_JRC_Hemibrain_1point1  5813054622   \n",
              "7   neuprint_JRC_Hemibrain_1point1  5813056598   \n",
              "8   neuprint_JRC_Hemibrain_1point1  1887168462   \n",
              "9   neuprint_JRC_Hemibrain_1point1  1640922516   \n",
              "10  neuprint_JRC_Hemibrain_1point1  1642623277   \n",
              "11  neuprint_JRC_Hemibrain_1point1  1702651358   \n",
              "12  neuprint_JRC_Hemibrain_1point1  1670287030   \n",
              "13  neuprint_JRC_Hemibrain_1point1  5813130064   \n",
              "14  neuprint_JRC_Hemibrain_1point1  5813069055   \n",
              "15  neuprint_JRC_Hemibrain_1point1  1762359683   \n",
              "16  neuprint_JRC_Hemibrain_1point1  1578826464   \n",
              "17  neuprint_JRC_Hemibrain_1point1  5813024698   \n",
              "18  neuprint_JRC_Hemibrain_1point1  5813076969   \n",
              "19  neuprint_JRC_Hemibrain_1point1  5813054777   \n",
              "20  neuprint_JRC_Hemibrain_1point1  1640572741   \n",
              "21  neuprint_JRC_Hemibrain_1point1  5813062199   \n",
              "22  neuprint_JRC_Hemibrain_1point1  1702318692   \n",
              "23  neuprint_JRC_Hemibrain_1point1  1826445251   \n",
              "24  neuprint_JRC_Hemibrain_1point1  5813047691   \n",
              "25  neuprint_JRC_Hemibrain_1point1  5813054726   \n",
              "26  neuprint_JRC_Hemibrain_1point1  1670627928   \n",
              "27  neuprint_JRC_Hemibrain_1point1  5813078440   \n",
              "28  neuprint_JRC_Hemibrain_1point1  1702305987   \n",
              "29  neuprint_JRC_Hemibrain_1point1  5813054725   \n",
              "30  neuprint_JRC_Hemibrain_1point1  1732995501   \n",
              "31  neuprint_JRC_Hemibrain_1point1  1640887603   \n",
              "32  neuprint_JRC_Hemibrain_1point1  2041621893   \n",
              "33  neuprint_JRC_Hemibrain_1point1  1702306037   \n",
              "34  neuprint_JRC_Hemibrain_1point1  1671620613   \n",
              "35  neuprint_JRC_Hemibrain_1point1  2040301572   \n",
              "36  neuprint_JRC_Hemibrain_1point1  1824101645   \n",
              "37  neuprint_JRC_Hemibrain_1point1  1640922754   \n",
              "38  neuprint_JRC_Hemibrain_1point1  5813069085   \n",
              "39  neuprint_JRC_Hemibrain_1point1  2105086391   \n",
              "40  neuprint_JRC_Hemibrain_1point1  1610530558   \n",
              "41  neuprint_JRC_Hemibrain_1point1  1699974843   \n",
              "42  neuprint_JRC_Hemibrain_1point1  5813055277   \n",
              "43  neuprint_JRC_Hemibrain_1point1  5901218894   \n",
              "44  neuprint_JRC_Hemibrain_1point1  5813018460   \n",
              "45  neuprint_JRC_Hemibrain_1point1  1671292719   \n",
              "46  neuprint_JRC_Hemibrain_1point1  5813034493   \n",
              "47  neuprint_JRC_Hemibrain_1point1  5813054773   \n",
              "48  neuprint_JRC_Hemibrain_1point1  1825789179   \n",
              "49  neuprint_JRC_Hemibrain_1point1  1888199872   \n",
              "50  neuprint_JRC_Hemibrain_1point1  5813034455   \n",
              "51  neuprint_JRC_Hemibrain_1point1  1640909284   \n",
              "52  neuprint_JRC_Hemibrain_1point1  1670278227   \n",
              "\n",
              "                            templates                dataset  \\\n",
              "0   JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "1   JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "2   JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "3   JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "4   JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "5   JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "6   JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "7   JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "8   JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "9   JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "10  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "11  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "12  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "13  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "14  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "15  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "16  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "17  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "18  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "19  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "20  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "21  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "22  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "23  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "24  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "25  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "26  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "27  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "28  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "29  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "30  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "31  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "32  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
              "33  JRC_FlyEM_Hemibrain|JRC2018Unisex  Xu2020NeuronsV1point1   \n",
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              "37  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
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              "52  JRC2018Unisex|JRC_FlyEM_Hemibrain  Xu2020NeuronsV1point1   \n",
              "\n",
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            ]
          },
          "execution_count": 5,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# Find local interneurons (intrinsic neurons) of the AL, overlapping DA3:\n",
        "\n",
        "local_in_DA3 = vc.get_instances(\"'local interneuron of adult antennal lobe' that 'overlaps' some 'antennal lobe glomerulus DA3'\",\n",
        "                                summary=True)\n",
        "local_in_DA3_tab = pd.DataFrame.from_records(local_in_DA3)\n",
        "local_in_DA3_tab"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 6,
      "metadata": {
        "cell_id": "00004-91e5a8af-2f48-4ebb-9c9a-765a7d80a5f1",
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        "execution_millis": 1293,
        "execution_start": 1614738285746,
        "output_cleared": false,
        "source_hash": "e41b421a",
        "tags": []
      },
      "outputs": [
        {
          "name": "stderr",
          "output_type": "stream",
          "text": [
            "INFO  : Found 584 neurons matching the search parameters (pymaid)\n"
          ]
        },
        {
          "data": {
            "text/html": [
              "&lt;class 'pymaid.core.CatmaidNeuronList'&gt; containing 584 neurons (0.0B)<div>\n",
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              "</style>\n",
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              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>type</th>\n",
              "      <th>name</th>\n",
              "      <th>skeleton_id</th>\n",
              "      <th>n_nodes</th>\n",
              "      <th>n_connectors</th>\n",
              "      <th>n_branches</th>\n",
              "      <th>n_leafs</th>\n",
              "      <th>cable_length</th>\n",
              "      <th>soma</th>\n",
              "      <th>units</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>CatmaidNeuron</td>\n",
              "      <td>Uniglomerular mALT DA1 lPN 57316 2863105 ML</td>\n",
              "      <td>2863104</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>1 nanometer</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>CatmaidNeuron</td>\n",
              "      <td>Uniglomerular mALT DA3 adPN 57350 HG</td>\n",
              "      <td>57349</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>1 nanometer</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>582</th>\n",
              "      <td>CatmaidNeuron</td>\n",
              "      <td>Multiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ...</td>\n",
              "      <td>4624378</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>1 nanometer</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>583</th>\n",
              "      <td>CatmaidNeuron</td>\n",
              "      <td>Uniglomerular mALT DL2d adPN 57342 ML</td>\n",
              "      <td>57341</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>NA</td>\n",
              "      <td>1 nanometer</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "</div>"
            ],
            "text/plain": [
              "<class 'pymaid.core.CatmaidNeuronList'> containing 584 neurons (0.0B)\n",
              "              type                                               name  \\\n",
              "0    CatmaidNeuron        Uniglomerular mALT DA1 lPN 57316 2863105 ML   \n",
              "1    CatmaidNeuron               Uniglomerular mALT DA3 adPN 57350 HG   \n",
              "..             ...                                                ...   \n",
              "582  CatmaidNeuron  Multiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ...   \n",
              "583  CatmaidNeuron              Uniglomerular mALT DL2d adPN 57342 ML   \n",
              "\n",
              "    skeleton_id n_nodes n_connectors n_branches n_leafs cable_length soma  \\\n",
              "0       2863104      NA           NA         NA      NA           NA   NA   \n",
              "1         57349      NA           NA         NA      NA           NA   NA   \n",
              "..          ...     ...          ...        ...     ...          ...  ...   \n",
              "582     4624378      NA           NA         NA      NA           NA   NA   \n",
              "583       57341      NA           NA         NA      NA           NA   NA   \n",
              "\n",
              "           units  \n",
              "0    1 nanometer  \n",
              "1    1 nanometer  \n",
              "..           ...  \n",
              "582  1 nanometer  \n",
              "583  1 nanometer  "
            ]
          },
          "execution_count": 6,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# Find neurons by dataset/paper - on CATMAID\n",
        "\n",
        "bates = pymaid.find_neurons(annotations='Paper: Bates and Schlegel et al 2020')\n",
        "bates"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 7,
      "metadata": {
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        "execution_millis": 2081,
        "execution_start": 1614738287044,
        "output_cleared": false,
        "source_hash": "46eeef09",
        "tags": []
      },
      "outputs": [
        {
          "data": {
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              "      <th>label</th>\n",
              "      <th>symbol</th>\n",
              "      <th>id</th>\n",
              "      <th>tags</th>\n",
              "      <th>description</th>\n",
              "      <th>miniref</th>\n",
              "      <th>FlyBase</th>\n",
              "      <th>PMID</th>\n",
              "      <th>DOI</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>67</th>\n",
              "      <td>EM L1 Andrade et al. 2019</td>\n",
              "      <td></td>\n",
              "      <td>Andrade2019</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[L1 EM reconstructed neurons from Andrade et a...</td>\n",
              "      <td>Andrade et al., 2019, Curr. Biol. 29(3): 412--...</td>\n",
              "      <td>FBrf0241389</td>\n",
              "      <td>30661802</td>\n",
              "      <td>10.1016/j.cub.2018.12.012</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>29</th>\n",
              "      <td>MBONs and split-GAL4 lines that target them (A...</td>\n",
              "      <td></td>\n",
              "      <td>Aso2014</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[]</td>\n",
              "      <td>Aso et al., 2014, eLife 3: e04577</td>\n",
              "      <td>FBrf0227179</td>\n",
              "      <td>25535793</td>\n",
              "      <td>10.7554/eLife.04577</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>64</th>\n",
              "      <td>split-GAL4 lines for dopaminergic neurons (Aso...</td>\n",
              "      <td></td>\n",
              "      <td>AsoRubin2016</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[For comparison of the properties of memories ...</td>\n",
              "      <td>Aso and Rubin, 2016, eLife 5: e16135</td>\n",
              "      <td>FBrf0233230</td>\n",
              "      <td>27441388</td>\n",
              "      <td>10.7554/eLife.16135</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>144</th>\n",
              "      <td>EM FAFB Baltruschat et al 2021</td>\n",
              "      <td></td>\n",
              "      <td>Baltruschat2021</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[FAFB EM reconstructed neurons from Baltruscha...</td>\n",
              "      <td>Baltruschat et al., 2021, Cell Rep. 34(11): 10...</td>\n",
              "      <td>FBrf0248487</td>\n",
              "      <td>33730583</td>\n",
              "      <td>10.1016/j.celrep.2021.108871</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>28</th>\n",
              "      <td>EM L1 Barnes et al., 2022</td>\n",
              "      <td></td>\n",
              "      <td>Barnes2022</td>\n",
              "      <td>Entity|DataSet|Individual|L1EM</td>\n",
              "      <td>[L1 EM reconstructed neurons from Barnes et al...</td>\n",
              "      <td>Barnes et al., 2022, PLoS ONE 17(4): e0266064</td>\n",
              "      <td>FBrf0253082</td>\n",
              "      <td>35377898</td>\n",
              "      <td>10.1371/journal.pone.0266064</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>88</th>\n",
              "      <td>EM L1 Zarin, Mark et al. 2019</td>\n",
              "      <td></td>\n",
              "      <td>Zarin2019</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[L1 EM reconstructed neurons from Zarin, Mark ...</td>\n",
              "      <td>Zarin, Mark et al., 2019</td>\n",
              "      <td></td>\n",
              "      <td></td>\n",
              "      <td>10.1101/617977</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>86</th>\n",
              "      <td>EM FAFB Zhao et al., 2023</td>\n",
              "      <td></td>\n",
              "      <td>Zhao2023</td>\n",
              "      <td>Entity|DataSet|Individual|FAFB</td>\n",
              "      <td>[FAFB EM reconstructed neurons from Zhao et al...</td>\n",
              "      <td></td>\n",
              "      <td></td>\n",
              "      <td></td>\n",
              "      <td></td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>43</th>\n",
              "      <td>EM FAFB Zheng et al 2018</td>\n",
              "      <td></td>\n",
              "      <td>Zheng2018</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[FAFB EM reconstructed neurons from Zheng et a...</td>\n",
              "      <td>Zheng et al., 2018, Cell 174(3): 730--743.e22</td>\n",
              "      <td>FBrf0239557</td>\n",
              "      <td>30033368</td>\n",
              "      <td>10.1016/j.cell.2018.06.019</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>44</th>\n",
              "      <td>EM FAFB Zheng et al 2020 (published 2022)</td>\n",
              "      <td></td>\n",
              "      <td>Zheng2020</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[FAFB EM reconstructed neurons from Zheng et a...</td>\n",
              "      <td>Zheng et al., 2022, Curr. Biol. 32(15): 3334--...</td>\n",
              "      <td>FBrf0254218</td>\n",
              "      <td>35797998</td>\n",
              "      <td>10.1016/j.cub.2022.06.031</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>74</th>\n",
              "      <td>Larval motor circuit neurons (Zwart2016)</td>\n",
              "      <td></td>\n",
              "      <td>Zwart2016</td>\n",
              "      <td>Entity|DataSet|Individual|has_image</td>\n",
              "      <td>[Zwart et al. 2016]</td>\n",
              "      <td>Zwart et al., 2016, Neuron 91(3): 615--628</td>\n",
              "      <td>FBrf0233076</td>\n",
              "      <td>27427461</td>\n",
              "      <td>10.1016/j.neuron.2016.06.031</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>145 rows × 9 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "                                                 label symbol  \\\n",
              "67                           EM L1 Andrade et al. 2019          \n",
              "29   MBONs and split-GAL4 lines that target them (A...          \n",
              "64   split-GAL4 lines for dopaminergic neurons (Aso...          \n",
              "144                     EM FAFB Baltruschat et al 2021          \n",
              "28                           EM L1 Barnes et al., 2022          \n",
              "..                                                 ...    ...   \n",
              "88                       EM L1 Zarin, Mark et al. 2019          \n",
              "86                           EM FAFB Zhao et al., 2023          \n",
              "43                            EM FAFB Zheng et al 2018          \n",
              "44           EM FAFB Zheng et al 2020 (published 2022)          \n",
              "74            Larval motor circuit neurons (Zwart2016)          \n",
              "\n",
              "                  id                                 tags  \\\n",
              "67       Andrade2019  Entity|DataSet|Individual|has_image   \n",
              "29           Aso2014  Entity|DataSet|Individual|has_image   \n",
              "64      AsoRubin2016  Entity|DataSet|Individual|has_image   \n",
              "144  Baltruschat2021  Entity|DataSet|Individual|has_image   \n",
              "28        Barnes2022       Entity|DataSet|Individual|L1EM   \n",
              "..               ...                                  ...   \n",
              "88         Zarin2019  Entity|DataSet|Individual|has_image   \n",
              "86          Zhao2023       Entity|DataSet|Individual|FAFB   \n",
              "43         Zheng2018  Entity|DataSet|Individual|has_image   \n",
              "44         Zheng2020  Entity|DataSet|Individual|has_image   \n",
              "74         Zwart2016  Entity|DataSet|Individual|has_image   \n",
              "\n",
              "                                           description  \\\n",
              "67   [L1 EM reconstructed neurons from Andrade et a...   \n",
              "29                                                  []   \n",
              "64   [For comparison of the properties of memories ...   \n",
              "144  [FAFB EM reconstructed neurons from Baltruscha...   \n",
              "28   [L1 EM reconstructed neurons from Barnes et al...   \n",
              "..                                                 ...   \n",
              "88   [L1 EM reconstructed neurons from Zarin, Mark ...   \n",
              "86   [FAFB EM reconstructed neurons from Zhao et al...   \n",
              "43   [FAFB EM reconstructed neurons from Zheng et a...   \n",
              "44   [FAFB EM reconstructed neurons from Zheng et a...   \n",
              "74                                 [Zwart et al. 2016]   \n",
              "\n",
              "                                               miniref      FlyBase      PMID  \\\n",
              "67   Andrade et al., 2019, Curr. Biol. 29(3): 412--...  FBrf0241389  30661802   \n",
              "29                   Aso et al., 2014, eLife 3: e04577  FBrf0227179  25535793   \n",
              "64                Aso and Rubin, 2016, eLife 5: e16135  FBrf0233230  27441388   \n",
              "144  Baltruschat et al., 2021, Cell Rep. 34(11): 10...  FBrf0248487  33730583   \n",
              "28       Barnes et al., 2022, PLoS ONE 17(4): e0266064  FBrf0253082  35377898   \n",
              "..                                                 ...          ...       ...   \n",
              "88                            Zarin, Mark et al., 2019                          \n",
              "86                                                                              \n",
              "43       Zheng et al., 2018, Cell 174(3): 730--743.e22  FBrf0239557  30033368   \n",
              "44   Zheng et al., 2022, Curr. Biol. 32(15): 3334--...  FBrf0254218  35797998   \n",
              "74          Zwart et al., 2016, Neuron 91(3): 615--628  FBrf0233076  27427461   \n",
              "\n",
              "                              DOI  \n",
              "67      10.1016/j.cub.2018.12.012  \n",
              "29            10.7554/eLife.04577  \n",
              "64            10.7554/eLife.16135  \n",
              "144  10.1016/j.celrep.2021.108871  \n",
              "28   10.1371/journal.pone.0266064  \n",
              "..                            ...  \n",
              "88                 10.1101/617977  \n",
              "86                                 \n",
              "43     10.1016/j.cell.2018.06.019  \n",
              "44      10.1016/j.cub.2022.06.031  \n",
              "74   10.1016/j.neuron.2016.06.031  \n",
              "\n",
              "[145 rows x 9 columns]"
            ]
          },
          "execution_count": 7,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# Inspect what datasets are available on VFB\n",
        "\n",
        "ds = vc.neo_query_wrapper.get_datasets(summary=True)\n",
        "ds_tab = pd.DataFrame.from_records(ds)\n",
        "ds_tab.sort_values(by=['id'])"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 8,
      "metadata": {
        "cell_id": "00011-0813a13c-a41c-4399-86ea-af6b1934912b",
        "deepnote_cell_type": "code",
        "deepnote_to_be_reexecuted": false,
        "execution_millis": 429,
        "execution_start": 1614738319313,
        "output_cleared": false,
        "source_hash": "8d995be0",
        "tags": []
      },
      "outputs": [
        {
          "data": {
            "text/html": [
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              "<style scoped>\n",
              "    .dataframe tbody tr th:only-of-type {\n",
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              "\n",
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              "</style>\n",
              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>label</th>\n",
              "      <th>symbol</th>\n",
              "      <th>id</th>\n",
              "      <th>tags</th>\n",
              "      <th>parents_label</th>\n",
              "      <th>parents_id</th>\n",
              "      <th>data_source</th>\n",
              "      <th>accession</th>\n",
              "      <th>templates</th>\n",
              "      <th>dataset</th>\n",
              "      <th>license</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>OA-VPM3 (FAFB:1329078)</td>\n",
              "      <td></td>\n",
              "      <td>VFB_001001dr</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>octopaminergic VPM3 neuron</td>\n",
              "      <td>FBbt_00110151</td>\n",
              "      <td>catmaid_fafb</td>\n",
              "      <td>1329078</td>\n",
              "      <td>JRC2018Unisex</td>\n",
              "      <td>Sayin2019</td>\n",
              "      <td>https://creativecommons.org/licenses/by-sa/4.0...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>OA-VPM4 (FAFB:1191261)</td>\n",
              "      <td></td>\n",
              "      <td>VFB_001001dq</td>\n",
              "      <td>Entity|Adult|Anatomy|Cell|Individual|Nervous_s...</td>\n",
              "      <td>octopaminergic VPM4 neuron</td>\n",
              "      <td>FBbt_00110152</td>\n",
              "      <td>catmaid_fafb</td>\n",
              "      <td>1191261</td>\n",
              "      <td>JRC2018Unisex</td>\n",
              "      <td>Sayin2019</td>\n",
              "      <td>https://creativecommons.org/licenses/by-sa/4.0...</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "</div>"
            ],
            "text/plain": [
              "                    label symbol            id  \\\n",
              "0  OA-VPM3 (FAFB:1329078)         VFB_001001dr   \n",
              "1  OA-VPM4 (FAFB:1191261)         VFB_001001dq   \n",
              "\n",
              "                                                tags  \\\n",
              "0  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "1  Entity|Adult|Anatomy|Cell|Individual|Nervous_s...   \n",
              "\n",
              "                parents_label     parents_id   data_source accession  \\\n",
              "0  octopaminergic VPM3 neuron  FBbt_00110151  catmaid_fafb   1329078   \n",
              "1  octopaminergic VPM4 neuron  FBbt_00110152  catmaid_fafb   1191261   \n",
              "\n",
              "       templates    dataset                                            license  \n",
              "0  JRC2018Unisex  Sayin2019  https://creativecommons.org/licenses/by-sa/4.0...  \n",
              "1  JRC2018Unisex  Sayin2019  https://creativecommons.org/licenses/by-sa/4.0...  "
            ]
          },
          "execution_count": 8,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "sayin_tab = pd.DataFrame.from_records(vc.get_instances_by_dataset('Sayin2019', summary=True))\n",
        "sayin_tab"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 9,
      "metadata": {
        "cell_id": "00013-c3cc7d86-9755-48dc-a66e-3a702ebbc015",
        "deepnote_cell_type": "code",
        "deepnote_to_be_reexecuted": false,
        "execution_millis": 279,
        "execution_start": 1614738289534,
        "source_hash": "962af1fb",
        "tags": []
      },
      "outputs": [
        {
          "data": {
            "text/html": [
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              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>upstream_neuron_id</th>\n",
              "      <th>upstream_neuron_name</th>\n",
              "      <th>weight</th>\n",
              "      <th>downstream_neuron_id</th>\n",
              "      <th>downstream_neuron_name</th>\n",
              "      <th>upstream_class</th>\n",
              "      <th>downstream_class</th>\n",
              "      <th>up_data_source</th>\n",
              "      <th>up_accession</th>\n",
              "      <th>down_source</th>\n",
              "      <th>down_accession</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>VFB_jrchjzxx</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813021192)</td>\n",
              "      <td>25</td>\n",
              "      <td>VFB_jrchjthm</td>\n",
              "      <td>DNp27_R (FlyEM-HB:1072063538)</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>descending neuron of the posterior brain DNp27</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "</div>"
            ],
            "text/plain": [
              "  upstream_neuron_id         upstream_neuron_name  weight  \\\n",
              "0       VFB_jrchjzxx  LNd_R (FlyEM-HB:5813021192)      25   \n",
              "\n",
              "  downstream_neuron_id         downstream_neuron_name upstream_class  \\\n",
              "0         VFB_jrchjthm  DNp27_R (FlyEM-HB:1072063538)     LNd neuron   \n",
              "\n",
              "                                 downstream_class up_data_source up_accession  \\\n",
              "0  descending neuron of the posterior brain DNp27           None         None   \n",
              "\n",
              "  down_source down_accession  \n",
              "0        None           None  "
            ]
          },
          "execution_count": 9,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "vc.get_connected_neurons_by_type(upstream_type='LNd', downstream_type='adult descending neuron', weight=20)"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 10,
      "metadata": {
        "cell_id": "00014-4dfb6b71-235d-4a48-8c0d-9207aa900448",
        "deepnote_cell_type": "code",
        "deepnote_to_be_reexecuted": false,
        "execution_millis": 286,
        "execution_start": 1614738379854,
        "source_hash": "d785af5",
        "tags": []
      },
      "outputs": [
        {
          "data": {
            "text/html": [
              "<div>\n",
              "<style scoped>\n",
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              "\n",
              "    .dataframe tbody tr th {\n",
              "        vertical-align: top;\n",
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              "\n",
              "    .dataframe thead th {\n",
              "        text-align: right;\n",
              "    }\n",
              "</style>\n",
              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>upstream_neuron_id</th>\n",
              "      <th>upstream_neuron_name</th>\n",
              "      <th>weight</th>\n",
              "      <th>downstream_neuron_id</th>\n",
              "      <th>downstream_neuron_name</th>\n",
              "      <th>upstream_class</th>\n",
              "      <th>downstream_class</th>\n",
              "      <th>up_data_source</th>\n",
              "      <th>up_accession</th>\n",
              "      <th>down_source</th>\n",
              "      <th>down_accession</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>VFB_jrchk089</td>\n",
              "      <td>LPN_R (FlyEM-HB:480029788)</td>\n",
              "      <td>43</td>\n",
              "      <td>VFB_jrchk08a</td>\n",
              "      <td>LPN_R (FlyEM-HB:450034902)</td>\n",
              "      <td>LP neuron</td>\n",
              "      <td>LP neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>VFB_jrchk08a</td>\n",
              "      <td>LPN_R (FlyEM-HB:450034902)</td>\n",
              "      <td>30</td>\n",
              "      <td>VFB_jrchk089</td>\n",
              "      <td>LPN_R (FlyEM-HB:480029788)</td>\n",
              "      <td>LP neuron</td>\n",
              "      <td>LP neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>VFB_jrchjtf3</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:387166379)</td>\n",
              "      <td>30</td>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>VFB_jrchjtf1</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:325529237)</td>\n",
              "      <td>30</td>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>VFB_jrchjtey</td>\n",
              "      <td>DN1a_R (FlyEM-HB:5813022274)</td>\n",
              "      <td>75</td>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>DN1a neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>5</th>\n",
              "      <td>VFB_jrchjtex</td>\n",
              "      <td>DN1a_R (FlyEM-HB:264083994)</td>\n",
              "      <td>79</td>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>DN1a neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>6</th>\n",
              "      <td>VFB_jrchjtf2</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:387944118)</td>\n",
              "      <td>34</td>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>7</th>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>40</td>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>8</th>\n",
              "      <td>VFB_jrchjtf0</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:324846570)</td>\n",
              "      <td>37</td>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>9</th>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>29</td>\n",
              "      <td>VFB_jrchjzxw</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813056917)</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>10</th>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>21</td>\n",
              "      <td>VFB_jrchjzxx</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813021192)</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>11</th>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>25</td>\n",
              "      <td>VFB_jrchjzxx</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813021192)</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>12</th>\n",
              "      <td>VFB_jrchjtf2</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:387944118)</td>\n",
              "      <td>22</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>13</th>\n",
              "      <td>VFB_jrchjtez</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:5813010153)</td>\n",
              "      <td>25</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>14</th>\n",
              "      <td>VFB_jrchjtex</td>\n",
              "      <td>DN1a_R (FlyEM-HB:264083994)</td>\n",
              "      <td>55</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>DN1a neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>15</th>\n",
              "      <td>VFB_jrchjtf3</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:387166379)</td>\n",
              "      <td>25</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>16</th>\n",
              "      <td>VFB_jrchjtf0</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:324846570)</td>\n",
              "      <td>25</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>17</th>\n",
              "      <td>VFB_jrchjzxy</td>\n",
              "      <td>LNd_R (FlyEM-HB:5813069648)</td>\n",
              "      <td>37</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>LNd neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>18</th>\n",
              "      <td>VFB_jrchjtey</td>\n",
              "      <td>DN1a_R (FlyEM-HB:5813022274)</td>\n",
              "      <td>63</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>DN1a neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>19</th>\n",
              "      <td>VFB_jrchjtf1</td>\n",
              "      <td>DN1pA_R (FlyEM-HB:325529237)</td>\n",
              "      <td>33</td>\n",
              "      <td>VFB_jrchk8e0</td>\n",
              "      <td>5th s-LNv (FlyEM-HB:511051477)</td>\n",
              "      <td>DN1p neuron</td>\n",
              "      <td>s-LNv neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "</div>"
            ],
            "text/plain": [
              "   upstream_neuron_id            upstream_neuron_name  weight  \\\n",
              "0        VFB_jrchk089      LPN_R (FlyEM-HB:480029788)      43   \n",
              "1        VFB_jrchk08a      LPN_R (FlyEM-HB:450034902)      30   \n",
              "2        VFB_jrchjtf3    DN1pA_R (FlyEM-HB:387166379)      30   \n",
              "3        VFB_jrchjtf1    DN1pA_R (FlyEM-HB:325529237)      30   \n",
              "4        VFB_jrchjtey    DN1a_R (FlyEM-HB:5813022274)      75   \n",
              "5        VFB_jrchjtex     DN1a_R (FlyEM-HB:264083994)      79   \n",
              "6        VFB_jrchjtf2    DN1pA_R (FlyEM-HB:387944118)      34   \n",
              "7        VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)      40   \n",
              "8        VFB_jrchjtf0    DN1pA_R (FlyEM-HB:324846570)      37   \n",
              "9        VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)      29   \n",
              "10       VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)      21   \n",
              "11       VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)      25   \n",
              "12       VFB_jrchjtf2    DN1pA_R (FlyEM-HB:387944118)      22   \n",
              "13       VFB_jrchjtez   DN1pA_R (FlyEM-HB:5813010153)      25   \n",
              "14       VFB_jrchjtex     DN1a_R (FlyEM-HB:264083994)      55   \n",
              "15       VFB_jrchjtf3    DN1pA_R (FlyEM-HB:387166379)      25   \n",
              "16       VFB_jrchjtf0    DN1pA_R (FlyEM-HB:324846570)      25   \n",
              "17       VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)      37   \n",
              "18       VFB_jrchjtey    DN1a_R (FlyEM-HB:5813022274)      63   \n",
              "19       VFB_jrchjtf1    DN1pA_R (FlyEM-HB:325529237)      33   \n",
              "\n",
              "   downstream_neuron_id          downstream_neuron_name upstream_class  \\\n",
              "0          VFB_jrchk08a      LPN_R (FlyEM-HB:450034902)      LP neuron   \n",
              "1          VFB_jrchk089      LPN_R (FlyEM-HB:480029788)      LP neuron   \n",
              "2          VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)    DN1p neuron   \n",
              "3          VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)    DN1p neuron   \n",
              "4          VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)    DN1a neuron   \n",
              "5          VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)    DN1a neuron   \n",
              "6          VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)    DN1p neuron   \n",
              "7          VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)   s-LNv neuron   \n",
              "8          VFB_jrchjzxy     LNd_R (FlyEM-HB:5813069648)    DN1p neuron   \n",
              "9          VFB_jrchjzxw     LNd_R (FlyEM-HB:5813056917)     LNd neuron   \n",
              "10         VFB_jrchjzxx     LNd_R (FlyEM-HB:5813021192)     LNd neuron   \n",
              "11         VFB_jrchjzxx     LNd_R (FlyEM-HB:5813021192)   s-LNv neuron   \n",
              "12         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)    DN1p neuron   \n",
              "13         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)    DN1p neuron   \n",
              "14         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)    DN1a neuron   \n",
              "15         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)    DN1p neuron   \n",
              "16         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)    DN1p neuron   \n",
              "17         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)     LNd neuron   \n",
              "18         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)    DN1a neuron   \n",
              "19         VFB_jrchk8e0  5th s-LNv (FlyEM-HB:511051477)    DN1p neuron   \n",
              "\n",
              "   downstream_class up_data_source up_accession down_source down_accession  \n",
              "0         LP neuron           None         None        None           None  \n",
              "1         LP neuron           None         None        None           None  \n",
              "2        LNd neuron           None         None        None           None  \n",
              "3        LNd neuron           None         None        None           None  \n",
              "4        LNd neuron           None         None        None           None  \n",
              "5        LNd neuron           None         None        None           None  \n",
              "6        LNd neuron           None         None        None           None  \n",
              "7        LNd neuron           None         None        None           None  \n",
              "8        LNd neuron           None         None        None           None  \n",
              "9        LNd neuron           None         None        None           None  \n",
              "10       LNd neuron           None         None        None           None  \n",
              "11       LNd neuron           None         None        None           None  \n",
              "12     s-LNv neuron           None         None        None           None  \n",
              "13     s-LNv neuron           None         None        None           None  \n",
              "14     s-LNv neuron           None         None        None           None  \n",
              "15     s-LNv neuron           None         None        None           None  \n",
              "16     s-LNv neuron           None         None        None           None  \n",
              "17     s-LNv neuron           None         None        None           None  \n",
              "18     s-LNv neuron           None         None        None           None  \n",
              "19     s-LNv neuron           None         None        None           None  "
            ]
          },
          "execution_count": 10,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "# Intra pacemaker neuron neuron connections\n",
        "\n",
        "vc.get_connected_neurons_by_type(upstream_type='pacemaker neuron', downstream_type='pacemaker neuron', weight=20)"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 11,
      "metadata": {
        "cell_id": "00014-805b86fa-55b8-4d49-a340-595932ba0c9a",
        "deepnote_cell_type": "code",
        "deepnote_to_be_reexecuted": false,
        "execution_millis": 80982,
        "execution_start": 1614738620354,
        "source_hash": "6ba8826f",
        "tags": []
      },
      "outputs": [
        {
          "data": {
            "text/html": [
              "<div>\n",
              "<style scoped>\n",
              "    .dataframe tbody tr th:only-of-type {\n",
              "        vertical-align: middle;\n",
              "    }\n",
              "\n",
              "    .dataframe tbody tr th {\n",
              "        vertical-align: top;\n",
              "    }\n",
              "\n",
              "    .dataframe thead th {\n",
              "        text-align: right;\n",
              "    }\n",
              "</style>\n",
              "<table border=\"1\" class=\"dataframe\">\n",
              "  <thead>\n",
              "    <tr style=\"text-align: right;\">\n",
              "      <th></th>\n",
              "      <th>upstream_neuron_id</th>\n",
              "      <th>upstream_neuron_name</th>\n",
              "      <th>weight</th>\n",
              "      <th>downstream_neuron_id</th>\n",
              "      <th>downstream_neuron_name</th>\n",
              "      <th>upstream_class</th>\n",
              "      <th>downstream_class</th>\n",
              "      <th>up_data_source</th>\n",
              "      <th>up_accession</th>\n",
              "      <th>down_source</th>\n",
              "      <th>down_accession</th>\n",
              "    </tr>\n",
              "  </thead>\n",
              "  <tbody>\n",
              "    <tr>\n",
              "      <th>0</th>\n",
              "      <td>VFB_jrchk5qg</td>\n",
              "      <td>SLP244_R (FlyEM-HB:297533212)</td>\n",
              "      <td>33</td>\n",
              "      <td>VFB_jrchjti6</td>\n",
              "      <td>DSKMP3_R (FlyEM-HB:327937328)</td>\n",
              "      <td>adult superior lateral protocerebrum neuron 244</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>1</th>\n",
              "      <td>VFB_jrchk5qf</td>\n",
              "      <td>SLP244_R (FlyEM-HB:298214577)</td>\n",
              "      <td>27</td>\n",
              "      <td>VFB_jrchjti6</td>\n",
              "      <td>DSKMP3_R (FlyEM-HB:327937328)</td>\n",
              "      <td>adult superior lateral protocerebrum neuron 244</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>2</th>\n",
              "      <td>VFB_jrchjyu7</td>\n",
              "      <td>LHAV3j1_R (FlyEM-HB:297851977)</td>\n",
              "      <td>24</td>\n",
              "      <td>VFB_jrchjti6</td>\n",
              "      <td>DSKMP3_R (FlyEM-HB:327937328)</td>\n",
              "      <td>adult lateral horn AV3j1 neuron</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>3</th>\n",
              "      <td>VFB_jrchk64p</td>\n",
              "      <td>SMP001_R (FlyEM-HB:5813056887)</td>\n",
              "      <td>22</td>\n",
              "      <td>VFB_jrchjti6</td>\n",
              "      <td>DSKMP3_R (FlyEM-HB:327937328)</td>\n",
              "      <td>adult superior medial protocerebrum neuron 001</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>4</th>\n",
              "      <td>VFB_jrchk0fd</td>\n",
              "      <td>MBON23(a2sp)_R (FlyEM-HB:423382015)</td>\n",
              "      <td>21</td>\n",
              "      <td>VFB_jrchjti6</td>\n",
              "      <td>DSKMP3_R (FlyEM-HB:327937328)</td>\n",
              "      <td>mushroom body output neuron 23</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>...</th>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "      <td>...</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>56</th>\n",
              "      <td>VFB_jrchjti6</td>\n",
              "      <td>DSKMP3_R (FlyEM-HB:327937328)</td>\n",
              "      <td>39</td>\n",
              "      <td>VFB_jrchjti4</td>\n",
              "      <td>DSKMP1B_R (FlyEM-HB:1352077058)</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>57</th>\n",
              "      <td>VFB_jrchk8dv</td>\n",
              "      <td>pC1c_R (FlyEM-HB:267551639)</td>\n",
              "      <td>84</td>\n",
              "      <td>VFB_jrchjti4</td>\n",
              "      <td>DSKMP1B_R (FlyEM-HB:1352077058)</td>\n",
              "      <td>adult doublesex pC1 (female) neuron</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>58</th>\n",
              "      <td>VFB_jrchk5jv</td>\n",
              "      <td>SLP152_R (FlyEM-HB:487812620)</td>\n",
              "      <td>28</td>\n",
              "      <td>VFB_jrchjti4</td>\n",
              "      <td>DSKMP1B_R (FlyEM-HB:1352077058)</td>\n",
              "      <td>adult superior lateral protocerebrum neuron 152</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>59</th>\n",
              "      <td>VFB_jrchk5eo</td>\n",
              "      <td>SLP066_R (FlyEM-HB:327843160)</td>\n",
              "      <td>42</td>\n",
              "      <td>VFB_jrchjti4</td>\n",
              "      <td>DSKMP1B_R (FlyEM-HB:1352077058)</td>\n",
              "      <td>adult superior lateral protocerebrum neuron 066</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "    <tr>\n",
              "      <th>60</th>\n",
              "      <td>VFB_jrchjti7</td>\n",
              "      <td>DSKMP3_R (FlyEM-HB:328559607)</td>\n",
              "      <td>53</td>\n",
              "      <td>VFB_jrchjti4</td>\n",
              "      <td>DSKMP1B_R (FlyEM-HB:1352077058)</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>adult Drosulfakinin neuron</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "      <td>None</td>\n",
              "    </tr>\n",
              "  </tbody>\n",
              "</table>\n",
              "<p>61 rows × 11 columns</p>\n",
              "</div>"
            ],
            "text/plain": [
              "   upstream_neuron_id                 upstream_neuron_name  weight  \\\n",
              "0        VFB_jrchk5qg        SLP244_R (FlyEM-HB:297533212)      33   \n",
              "1        VFB_jrchk5qf        SLP244_R (FlyEM-HB:298214577)      27   \n",
              "2        VFB_jrchjyu7       LHAV3j1_R (FlyEM-HB:297851977)      24   \n",
              "3        VFB_jrchk64p       SMP001_R (FlyEM-HB:5813056887)      22   \n",
              "4        VFB_jrchk0fd  MBON23(a2sp)_R (FlyEM-HB:423382015)      21   \n",
              "..                ...                                  ...     ...   \n",
              "56       VFB_jrchjti6        DSKMP3_R (FlyEM-HB:327937328)      39   \n",
              "57       VFB_jrchk8dv          pC1c_R (FlyEM-HB:267551639)      84   \n",
              "58       VFB_jrchk5jv        SLP152_R (FlyEM-HB:487812620)      28   \n",
              "59       VFB_jrchk5eo        SLP066_R (FlyEM-HB:327843160)      42   \n",
              "60       VFB_jrchjti7        DSKMP3_R (FlyEM-HB:328559607)      53   \n",
              "\n",
              "   downstream_neuron_id           downstream_neuron_name  \\\n",
              "0          VFB_jrchjti6    DSKMP3_R (FlyEM-HB:327937328)   \n",
              "1          VFB_jrchjti6    DSKMP3_R (FlyEM-HB:327937328)   \n",
              "2          VFB_jrchjti6    DSKMP3_R (FlyEM-HB:327937328)   \n",
              "3          VFB_jrchjti6    DSKMP3_R (FlyEM-HB:327937328)   \n",
              "4          VFB_jrchjti6    DSKMP3_R (FlyEM-HB:327937328)   \n",
              "..                  ...                              ...   \n",
              "56         VFB_jrchjti4  DSKMP1B_R (FlyEM-HB:1352077058)   \n",
              "57         VFB_jrchjti4  DSKMP1B_R (FlyEM-HB:1352077058)   \n",
              "58         VFB_jrchjti4  DSKMP1B_R (FlyEM-HB:1352077058)   \n",
              "59         VFB_jrchjti4  DSKMP1B_R (FlyEM-HB:1352077058)   \n",
              "60         VFB_jrchjti4  DSKMP1B_R (FlyEM-HB:1352077058)   \n",
              "\n",
              "                                     upstream_class  \\\n",
              "0   adult superior lateral protocerebrum neuron 244   \n",
              "1   adult superior lateral protocerebrum neuron 244   \n",
              "2                   adult lateral horn AV3j1 neuron   \n",
              "3    adult superior medial protocerebrum neuron 001   \n",
              "4                    mushroom body output neuron 23   \n",
              "..                                              ...   \n",
              "56                       adult Drosulfakinin neuron   \n",
              "57              adult doublesex pC1 (female) neuron   \n",
              "58  adult superior lateral protocerebrum neuron 152   \n",
              "59  adult superior lateral protocerebrum neuron 066   \n",
              "60                       adult Drosulfakinin neuron   \n",
              "\n",
              "              downstream_class up_data_source up_accession down_source  \\\n",
              "0   adult Drosulfakinin neuron           None         None        None   \n",
              "1   adult Drosulfakinin neuron           None         None        None   \n",
              "2   adult Drosulfakinin neuron           None         None        None   \n",
              "3   adult Drosulfakinin neuron           None         None        None   \n",
              "4   adult Drosulfakinin neuron           None         None        None   \n",
              "..                         ...            ...          ...         ...   \n",
              "56  adult Drosulfakinin neuron           None         None        None   \n",
              "57  adult Drosulfakinin neuron           None         None        None   \n",
              "58  adult Drosulfakinin neuron           None         None        None   \n",
              "59  adult Drosulfakinin neuron           None         None        None   \n",
              "60  adult Drosulfakinin neuron           None         None        None   \n",
              "\n",
              "   down_accession  \n",
              "0            None  \n",
              "1            None  \n",
              "2            None  \n",
              "3            None  \n",
              "4            None  \n",
              "..            ...  \n",
              "56           None  \n",
              "57           None  \n",
              "58           None  \n",
              "59           None  \n",
              "60           None  \n",
              "\n",
              "[61 rows x 11 columns]"
            ]
          },
          "execution_count": 11,
          "metadata": {},
          "output_type": "execute_result"
        }
      ],
      "source": [
        "\n",
        "vc.get_connected_neurons_by_type(upstream_type='adult neuron', downstream_type='adult Drosulfakinin neuron', weight=20)"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "### Transcriptomics Queries\n",
        "\n",
        "# Finding single cell transcriptomics data for a given cell type"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 12,
      "metadata": {},
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "                                  cell_type   cell_type_id       sample_sex  \\\n",
            "0  adult antennal olfactory receptor neuron  FBbt_00007352  female organism   \n",
            "1  adult antennal olfactory receptor neuron  FBbt_00007352    male organism   \n",
            "2  adult antennal olfactory receptor neuron  FBbt_00007352             None   \n",
            "3  adult antennal olfactory receptor neuron  FBbt_00007352             None   \n",
            "4  adult antennal olfactory receptor neuron  FBbt_00007352    male organism   \n",
            "\n",
            "                                       sample_tissue  \\\n",
            "0  [antenna, adult tracheal system, wing, haltere...   \n",
            "1  [adult head, adult, wing, proboscis, testis, m...   \n",
            "2  [leg, adult, adult fat body, adult abdomen, ad...   \n",
            "3  [leg, adult, adult fat body, adult abdomen, ad...   \n",
            "4  [adult head, adult, wing, proboscis, testis, m...   \n",
            "\n",
            "                                            ref     gene      gene_id  \\\n",
            "0  Li et al., 2022, Science 375(6584): eabk2432  14-3-3ε  FBgn0020238   \n",
            "1  Li et al., 2022, Science 375(6584): eabk2432  14-3-3ε  FBgn0020238   \n",
            "2  Li et al., 2022, Science 375(6584): eabk2432  14-3-3ε  FBgn0020238   \n",
            "3  Li et al., 2022, Science 375(6584): eabk2432  14-3-3ζ  FBgn0004907   \n",
            "4  Li et al., 2022, Science 375(6584): eabk2432  14-3-3ζ  FBgn0004907   \n",
            "\n",
            "  function    extent      level  \n",
            "0       []  0.609756  1395.2687  \n",
            "1       []  0.625000  1317.0752  \n",
            "2       []  0.618605  1340.0747  \n",
            "3       []  0.709302  1613.5887  \n",
            "4       []  0.640625  1561.3594  \n"
          ]
        }
      ],
      "source": [
        "\n",
        "profile = vc.get_transcriptomic_profile(cell_type = 'adult olfactory receptor neuron')\n",
        "print(profile.head())"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "These results can be filtered by gene function - first find available gene functions"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 13,
      "metadata": {},
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "['Acetylcholine_receptor', 'Calcium_binding', 'Dopamine_receptor', 'Enzyme', 'GABA_receptor', 'GPCR', 'Glutamate_receptor', 'Gustatory_receptor', 'Histamine_receptor', 'Hormone', 'Ion_channel', 'Mechanosensory_ion_channel', 'Neuropeptide', 'Octopamine_receptor', 'Odorant_binding', 'Olfactory_receptor', 'Peptide_or_protein_hormone_receptor', 'Photoreceptor', 'Serotonin_receptor', 'Thermosensory_ion_channel', 'Transcription_factor', 'Tyramine_receptor']\n"
          ]
        }
      ],
      "source": [
        "functions = vc.get_gene_function_filters()\n",
        "print(functions)"
      ]
    },
    {
      "cell_type": "markdown",
      "metadata": {},
      "source": [
        "Then run transcriptomics query speicfying a gene function to filter on"
      ]
    },
    {
      "cell_type": "code",
      "execution_count": 14,
      "metadata": {},
      "outputs": [
        {
          "name": "stdout",
          "output_type": "stream",
          "text": [
            "                         cell_type   cell_type_id       sample_sex  \\\n",
            "0  adult olfactory receptor neuron  FBbt_00007386  female organism   \n",
            "1  adult olfactory receptor neuron  FBbt_00007386    male organism   \n",
            "2  adult olfactory receptor neuron  FBbt_00007386             None   \n",
            "3  adult olfactory receptor neuron  FBbt_00007386  female organism   \n",
            "4  adult olfactory receptor neuron  FBbt_00007386             None   \n",
            "\n",
            "                                       sample_tissue  \\\n",
            "0                                          [antenna]   \n",
            "1  [adult head, adult, wing, proboscis, testis, m...   \n",
            "2                                          [antenna]   \n",
            "3                                       [adult head]   \n",
            "4                                       [adult head]   \n",
            "\n",
            "                                            ref  gene      gene_id  \\\n",
            "0  Li et al., 2022, Science 375(6584): eabk2432  Orco  FBgn0037324   \n",
            "1  Li et al., 2022, Science 375(6584): eabk2432  Orco  FBgn0037324   \n",
            "2  Li et al., 2022, Science 375(6584): eabk2432  Orco  FBgn0037324   \n",
            "3  Li et al., 2022, Science 375(6584): eabk2432  Orco  FBgn0037324   \n",
            "4  Li et al., 2022, Science 375(6584): eabk2432  Orco  FBgn0037324   \n",
            "\n",
            "                                            function    extent      level  \n",
            "0  [Olfactory_receptor, Ion_channel, Odorant_bind...  0.726703  1699.4030  \n",
            "1  [Olfactory_receptor, Ion_channel, Odorant_bind...  0.734430  2036.3027  \n",
            "2  [Olfactory_receptor, Ion_channel, Odorant_bind...  0.759753  1789.3881  \n",
            "3  [Olfactory_receptor, Ion_channel, Odorant_bind...  0.719388  2769.3171  \n",
            "4  [Olfactory_receptor, Ion_channel, Odorant_bind...  0.702703  2649.6653  \n"
          ]
        }
      ],
      "source": [
        "filtered_profile = vc.get_transcriptomic_profile(cell_type = 'adult olfactory receptor neuron', gene_type='Olfactory_receptor')\n",
        "print(filtered_profile.head())"
      ]
    }
  ],
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