Fastq-to-fasta-

Fastq to fasta conversion Fastq_to_fasta.py README

Dependencies

python3 python-dev (sudo apt-get install python-dev), seqtk (can be installed using conda -

	 conda install -c bioconda/label/cf201901 seqtk

Alternatevely, can be installed locally by downloading the source code from:

	 https://github.com/lh3/seqtk

goal

Fastq_to_fasta.py is a bash script with use of python language designed to automate the process of converting pool of fastq files into fasta files useing sektq tool.

input

input files should be in .fastq format

example : file.fastq

output

output represents files(reads) with .fasta extension located in output folder.

command line examples

python3 Fastq_to_fasta.py /path/to/input_dir /path/to/out_dir #This will generate bash file#

./convert_to_fasta_files.sh #This will run generated bash file

#written by Shevtsov V. xatabadich(at)gmail.com