enable type species in voucher table

voseq/create_dataset/views.py

@@ -1,3 +1,4 @@
+import logging
 import os
 import re
 
@@ -12,6 +13,9 @@
 from .utils import CreateDataset
 
 
+log = logging.getLogger(__name__)
+
+
 @login_required
 def index(request):
     form = CreateDatasetForm()
@@ -65,7 +69,7 @@ def results(request):
                           },
                           )
         else:
-            print("invalid form")
+            log.debug("invalid form")
             return render(request, 'create_dataset/index.html',
                           {
                               'username': username,

voseq/gene_table/views.py

@@ -1,5 +1,6 @@
 import copy
 import csv
+import logging
 import os
 import uuid
 
@@ -16,6 +17,9 @@
 from public_interface.models import Genes
 
 
+log = logging.getLogger(__name__)
+
+
 def index(request):
     version, stats = get_version_stats()
     username = get_username(request)
@@ -129,7 +133,7 @@ def get_stats_from_datasets(self):
             try:
                 os.remove(in_file)
             except OSError as e:
-                print("There is no partition file to remove: {0}".format(e))
+                log.error("There is no partition file to remove: {0}".format(e))
         return stats
 
     def make_guid(self):

voseq/voucher_table/forms.py

@@ -19,11 +19,12 @@ class VoucherTableForm(BaseDatasetForm):
             ('subspecies', 'Subspecies'),
             ('author', 'Author'),
             ('hostorg', 'Host org.'),
+            ('type_species', 'Type species'),
         ],
         widget=forms.CheckboxSelectMultiple(),
         initial=['code', 'genus', 'species'],
         required=False,
-        help_text='If taxon_names is None, use standart code_genus_species',
+        help_text='If taxon_names is None, use standard code_genus_species',
     )
     collector_info = forms.MultipleChoiceField(
         label='Locality and collector info:',
@@ -51,7 +52,7 @@ class VoucherTableForm(BaseDatasetForm):
         required=False,
     )
     field_delimitor = forms.ChoiceField(
-        label='Choose your field delimitor:',
+        label='Choose your field delimiter:',
         choices=[
             ('COMMA', 'comma'),
             ('TAB', 'tab'),