GitHub - VolundurH/Fusion

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
221207_final_lgbm_model_booster.RDS		221207_final_lgbm_model_booster.RDS
README		README
analyze_arriba_fusions.R		analyze_arriba_fusions.R
arriba_fusion_ml_lgbm_final_model.Rds		arriba_fusion_ml_lgbm_final_model.Rds
arriba_fusion_ml_lgbm_tuning_object.Rds		arriba_fusion_ml_lgbm_tuning_object.Rds
binomial_enrichment_analysis.R		binomial_enrichment_analysis.R
detect_breakpoint_microhomology.R		detect_breakpoint_microhomology.R
fusion_data_ML_preprocessing.R		fusion_data_ML_preprocessing.R
lightgbm_model_fusion_classifier.R		lightgbm_model_fusion_classifier.R

Repository files navigation

Repo for the paper Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification.
WGS validation pipeline can be found at https://github.com/VolundurH/wgs_fusion_pipeline