- Annie Chan, National Institute for Communicable Diseases, South Africa
- Arun Decano, St. Andrews University, UK
- Erikson Odih, University of Ibadan, Nigeria
- Narendar Kumar, Wellcome Sanger Institute, UK
- Pimlapas Leekitcharoenphon (Shinny), National Food Institute, Denmark
- Stan Kwenda, National Institute for Communicable Diseases, South Africa
- Plenary Lecture: Rene Hendriksen, National Food Institute, Denmark
- Lecture 1: Zamantungwa Khumalo, ClinVet, South Africa
- Lecture 2: Joconiah Chirenda, University of Zimbabwe, Zimbabwe
- Lecture 3: Sabelle Jallow, National Institute for Communicable Diseases, South Africa
- Lecture 4: Lavania Joseph, National Institute for Communicable Diseases, South Africa
- Lecture 5: Michelle Lowe, National Institute for Communicable Diseases, South Africa
Introductory session
Session 1: Intro to sequence data & QC
Session 2: Genome assembly
Session 3: Genome annotation
Session 4: Bacteria subtyping
Session 5: AMR detection
Session 6: Phylogenetic analysis
Session 7: Transmission analysis
- Introductory presentation
- Hands-on exercises manual
- Use this link to navigate to the microreact instance for this tutorial
Session 8: SAGESA Network discussion
