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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

Popular repositories

  1. doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    184 244

  2. InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 160 92

  3. dragonstar2019 Public

    131 98

  4. DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 88 36

  5. PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 78 46

  6. biocluster Public

    Tutorial on building a computing cluster for bioinformatics

    72 35

Repositories

  • NanoRepeat Public

    NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

    Python 8 MIT 1 0 0 Updated Jun 4, 2023
  • LIQA Public

    Long-read Isoform Quantification and Analysis

    Python 25 11 21 0 Updated Jun 2, 2023
  • LongReadSum Public
    C++ 4 MIT 0 6 0 Updated Jun 1, 2023
  • InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 160 92 48 1 Updated May 28, 2023
  • mutformer Public

    A transformer model to predict pathogenic mutations

    Jupyter Notebook 4 Apache-2.0 2 0 0 Updated May 17, 2023
  • PhenoSV Public

    PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.

    Python 1 MIT 0 0 0 Updated May 16, 2023
  • NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 63 MIT 7 21 0 Updated May 14, 2023
  • PhenoGPT Public
    Jupyter Notebook 0 0 0 0 Updated May 8, 2023
  • DeepMod2 Public

    DeepMod that works on Guppy or Tombo generated FAST5 files

    Python 3 MIT 1 8 0 Updated Apr 10, 2023
  • PhenCards Public

    Development of phencards.org web server for one stop shop of phenotype information

    HTML 4 1 11 0 Updated Mar 24, 2023
View all repositories

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