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phenolyzer
phenotype-based prioritization of candidate genes for human diseases
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Phen2Gene
Phenotype driven gene prioritization for HPO
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HX1-website
This repository is the HX1 website at hx1.wglab.org
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doc-ANNOVAR
Documentation for the ANNOVAR software
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NanoMod
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
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DeepMod
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
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RepeatHMM
a hidden Markov model to infer simple repeats from genome sequences
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PennCNV
Copy number vaiation detection from SNP arrays
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wglab.github.io
Distribution website for software tools developed by WGLab
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biocluster
Tutorial on building a computing cluster for bioinformatics
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InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
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EHR-Phenolyzer
A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
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GDP
Group lasso based Deep Neural Network for Cancer Prognosis
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UROBORUS
UROBORUS: circular RNA identification from RNA-Seq data
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icages
iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient
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VirTect
Detection of viruses from RNA-Seq on human samples
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GenGen
A set of software tools to facilitate GWAS analysis
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iMEGES
integrated Mental-disorder Genome Score
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uniline
Assembly-based analysis
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bibm2017-workshop
Home page for the "Translational Bioinformatics in Precision Medicine" workshop in BIBM2017
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GDNNP-visualization
Repository to host the visualizations for iCAGES
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PennCNV-Seq
Adaption of the original PennCNV algorithm for whole-genome sequencing data
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SeqMule
Automated human exome/genome variants detection from FASTQ files
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w4CSeq
web server of 4C-Seq data analysis pipeline
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HadoopCNV
HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data
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SVGen
Simulator for structural variants in various types of next-generation sequencing data
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Enlight
Web server for epigenetic annotation of genetic variants
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lncScore
A python package for the identification of lncRNA from the assembled novel transcripts
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