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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

Popular repositories

  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    207 316

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 178 92

  3. dragonstar2019 dragonstar2019 Public

    132 98

  4. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 95 36

  5. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 88 8

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 87 51

Repositories

Showing 10 of 73 repositories
  • GestaltMML Public
    Jupyter Notebook 0 MIT 0 0 0 Updated May 5, 2024
  • LIQA Public

    Long-read Isoform Quantification and Analysis

    Python 35 12 2 0 Updated May 4, 2024
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    C++ 1 MIT 0 5 1 Updated May 2, 2024
  • NanoRepeat Public

    NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

    Python 15 MIT 1 3 0 Updated May 2, 2024
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    Python 0 MIT 0 0 0 Updated May 1, 2024
  • LongReadSum Public
    C++ 4 MIT 1 6 0 Updated Apr 30, 2024
  • DeepMod2 Public

    DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

    Jupyter Notebook 26 MIT 2 6 0 Updated Apr 26, 2024
  • NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 88 MIT 8 26 0 Updated Apr 22, 2024
  • PhenoSV Public

    PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.

    Python 13 MIT 3 2 0 Updated Apr 19, 2024
  • PhenoGPT Public
    Jupyter Notebook 10 MIT 4 1 0 Updated Apr 16, 2024
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