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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    244 390

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 194 94

  3. dragonstar2019 dragonstar2019 Public

    135 95

  4. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 109 8

  5. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 104 35

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 91 55

Repositories

Showing 10 of 87 repositories
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 0 Updated May 17, 2025
  • MINT-LLM Public
    WGLab/MINT-LLM’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 16, 2025
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 11 MIT 2 2 0 Updated May 6, 2025
  • Gene-Fusion-Detection-Pipeline-LRS Public

    The Gene Fusion (GF) Detection Pipeline is comprehensive bioinformatics workflow designed for Oxford Nanopore long-read sequencing data.

    WGLab/Gene-Fusion-Detection-Pipeline-LRS’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 11, 2025
  • LIQA2 Public
    WGLab/LIQA2’s past year of commit activity
    Python 0 0 1 0 Updated Apr 8, 2025
  • LongReadSum Public
    WGLab/LongReadSum’s past year of commit activity
    C++ 18 MIT 3 4 0 Updated Apr 1, 2025
  • RankVar Public
    WGLab/RankVar’s past year of commit activity
    Python 0 0 0 0 Updated Mar 25, 2025
  • LIQA Public

    Long-read Isoform Quantification and Analysis

    WGLab/LIQA’s past year of commit activity
    Python 39 13 0 0 Updated Mar 25, 2025
  • CoT-RAG-LLM-Gene-Prioritization-Disease-Diagnosis Public
    WGLab/CoT-RAG-LLM-Gene-Prioritization-Disease-Diagnosis’s past year of commit activity
    2 MIT 0 0 0 Updated Mar 23, 2025
  • doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    WGLab/doc-ANNOVAR’s past year of commit activity
    244 390 130 0 Updated Mar 21, 2025
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