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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    232 349

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 188 93

  3. dragonstar2019 dragonstar2019 Public

    135 98

  4. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 99 35

  5. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 99 8

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 89 53

Repositories

Showing 10 of 79 repositories
  • doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    WGLab/doc-ANNOVAR’s past year of commit activity
    232 349 122 0 Updated Oct 10, 2024
  • SCOTCH Public

    Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing

    WGLab/SCOTCH’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Oct 10, 2024
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 1 Updated Oct 9, 2024
  • LongReadSum Public
    WGLab/LongReadSum’s past year of commit activity
    C++ 12 MIT 2 5 0 Updated Sep 27, 2024
  • PhenoGPT Public
    WGLab/PhenoGPT’s past year of commit activity
    Jupyter Notebook 16 MIT 5 4 0 Updated Sep 20, 2024
  • phenopacket2prompt Public Forked from monarch-initiative/phenopacket2prompt

    GA4GH Phenopacket to LLM prompt

    WGLab/phenopacket2prompt’s past year of commit activity
    Java 0 MIT 1 0 0 Updated Sep 15, 2024
  • Gene-Fusion-Detection-Pipeline-LRS Public

    The Gene Fusion (GF) Detection Pipeline is comprehensive bioinformatics workflow designed for Oxford Nanopore long-read sequencing data.

    WGLab/Gene-Fusion-Detection-Pipeline-LRS’s past year of commit activity
    Python 0 0 0 0 Updated Aug 30, 2024
  • GestaltMML Public
    WGLab/GestaltMML’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 12, 2024
  • DeepMod2 Public

    DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

    WGLab/DeepMod2’s past year of commit activity
    Jupyter Notebook 33 MIT 2 11 0 Updated Aug 9, 2024
  • LIQA Public

    Long-read Isoform Quantification and Analysis

    WGLab/LIQA’s past year of commit activity
    Python 39 13 1 0 Updated Aug 8, 2024
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