Replace __pd__ from Galaxy (#98)

WGS-TB · Mar 27, 2019 · a0c2246 · a0c2246
1 parent d855af2
commit a0c2246
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/...nagers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py b/...nagers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py
@@ -17,6 +17,7 @@
 
 
 def mentalist_download_pubmlst( data_manager_dict, kmer_size, scheme, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ):
+    scheme = scheme.replace('__pd__','#')
     translation_table = string.maketrans(string.punctuation, ("_" * 32))
     base_path = scheme.lower().replace(" ", "_").translate(translation_table) + "_pubmlst"
     today = datetime.date.today().isoformat()