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configure.ac
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configure.ac
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#
# CAUTION!
#
# The file configure.ac is auto-generated from configure.ac.in
# Changes to configure.ac will be overwritten by bootstrap.sh
#
AC_PREREQ(2.52)
AC_INIT([nest], [2.6.0], [nest_user@nest-initiative.org])
# Prevent automatic rebuilding of Makefile.ins and configure if their
# content or timestamp changes. Not doing this lead to failing builds
# from tarballs on platforms with older versions of autotools. See
# stackoverflow.com/questions/18769770 for the problem. Rebuilding can
# still be enabled by configuring with --enable-maintainer-mode.
AM_MAINTAINER_MODE([disable])
# These variables are exported to libnestutil/config.h
# The patchlevel is updated automatically by the script
# releasetools/buildnest
SLI_MAJOR=2
SLI_MINOR=6
SLI_PATCHLEVEL=0
SLI_PRGNAME="nest-$SLI_MAJOR.$SLI_MINOR.$SLI_PATCHLEVEL"
SLI_VERSION=$SLI_MAJOR.$SLI_MINOR.$SLI_PATCHLEVEL
# Exporting source and build directories to SLI requires full path names.
# Thus we have to expand. Here, we are in top build dir, since source dir
# must exist, we can just move there and call pwd
if test "x$srcdir" = x ; then
PKGSRCDIR=`pwd`
else
PKGSRCDIR=`cd $srcdir && pwd`
fi
PKGBUILDDIR=`pwd`
# If the user did not supply --prefix, we fail loudly
if test $prefix = NONE; then
echo "Please supply a valid installation prefix, for example ./configure --prefix=\$HOME/opt/nest !"
exit 1
fi
# If this is not called, install-sh will be put into .. by bootstrap.sh
# moritz, 06-26-06
AC_CONFIG_AUX_DIR(.)
# We might consider switching to tar-pax (2001) in the future, for now
# tar-ustar (1988) is probably good enough. tar-v7 is not an option, since
# we already hit the 99 char filename limit.
AM_INIT_AUTOMAKE([tar-ustar subdir-objects])
# Allow to build NEST using silent rules.
m4_ifdef([AM_SILENT_RULES], [AM_SILENT_RULES])
# Obtain host system type; HEP 2004-12-20
AC_CANONICAL_HOST
# This is necessary to use AC_CHECK_HEADER
AC_USE_SYSTEM_EXTENSIONS
# ------------------------------------------------------------------------
# Handle options
#
# NOTE: No programs/compilations must be run in this section;
# otherwise CFLAGS and CXXFLAGS may take on funny default
# values.
# HEP 2004-12-20
# ------------------------------------------------------------------------
# Use PS_ARRAYS
AC_DEFINE(PS_ARRAYS, 1, [Use PS array construction semantics])
# Debug level
# Note, $SLI_debug is used in acinclude.m4
SLI_debug="unset"
# Flags depend on platform and compiler and will be set later
SLI_debugflags=""
# Optimization level
# Note, $SLI_optimize is used in acinclude.m4
SLI_optimize="set"
# Flags depend on platform and compiler and will be set later
SLI_optimizeflags=""
# Warning level
# Note, $SLI_warning is used in acinclude.m4
SLI_warning="set"
# Flags depend on platform and compiler and will be set later
SLI_warningflags=""
# Select elementary unit of time
# example:
# ./configure --with-tics-per-ms=1000 // 1 microsecond, default
# ./configure --with-tics-per-ms=1e3 // the same
# ./configure --with-tics-per-ms='std::ldexp(1.0,13)' // 2^13 tics per ms
#
AC_ARG_WITH(tics_per_ms,[ --with-tics-per-ms=nnn Specify elementary unit of time.],
[if test "$withval" != no; then
AC_DEFINE(HAVE_TICS_PER_MS,1, [Tics per millisecond specified? ])
AC_DEFINE_UNQUOTED(CONFIG_TICS_PER_MS, ${withval}, [tics per ms in simulation])
fi])
# Select resolution of simulation
# example:
# ./configure --with-tics-per-step=100 // 100 tics per step = 0.1ms (default)
#
AC_ARG_WITH(tics_per_step,[ --with-tics-per-step=nnn Specify resolution.],
[if test "$withval" != no; then
AC_DEFINE(HAVE_TICS_PER_STEP,1, [Tics per step specified? ])
AC_DEFINE_UNQUOTED(CONFIG_TICS_PER_STEP, ${withval}, [tics per step in simulation])
fi])
# Select usage of the vampir tool
#
# in order to analyze the result of a program run
# the required environment variables are:
# PAL_ROOT e.g. /usr/nld/vampir
# PAL_LICENSEFILE e.g. /usr/nld/vampir/etc/license.dat
# and path to the binary vampir which needs to be called with the
# trace file .bpv as a parameter.
#
# 28.3.03 Diesmann, Morrison
#
AC_ARG_WITH(vampir,[ --with-vampir Include support for the Vampir tool.],
[if test "$withval" != no; then
AC_DEFINE(HAVE_VAMPIR,1, [Vampir support enabled? ])
VAMPIR_PATH="${withval}"
VAMPIR_LIBS="-L${VAMPIR_PATH}/lib -lVT -lpmpi"
VAMPIR_CFLAGS="-I${VAMPIR_PATH}/include"
else
unset HAVE_VAMPIR
unset VAMPIR_PATH
unset VAMPIR_LIBS
unset VAMPIR_CFLAGS
fi])
# memory_thisjob_darwin needs the mach/mach.h header to get
# information about memory consumption
# 05 Nov 2014 Tammo Ippen
AC_CHECK_HEADERS(mach/mach.h)
bluegene_architecture="none"
configure_bluegene="no"
AC_MSG_CHECKING(whether we are configuring for Blue Gene)
AC_ARG_ENABLE([bluegene],
[AS_HELP_STRING([--enable-bluegene],
[Configure for Blue Gene; the specific BG model must be given as argument (=L/P/Q).])],
[if test "x$enableval" != "xno" ; then
configure_bluegene="yes"
enableval_uc=`echo ${enableval} | awk {'print toupper($_)'}`
if test "x$enableval_uc" = xL || test "x$enableval_uc" = xP || test "x$enableval_uc" = xQ; then
bluegene_architecture="$enableval_uc"
else
echo
AC_MSG_ERROR([Only L, P, or Q are valid arguments for --enable-bluegene.])
fi
fi],[])
if test "x$configure_bluegene" = xno ; then
AC_MSG_RESULT(no)
else
AC_MSG_RESULT([yes ($bluegene_architecture)])
fi
# register variable IS_BLUEGENE to be visible in Makefile.am
# required to suppress slidoc installation, which would fail due to cross-compile
AM_CONDITIONAL(IS_BLUEGENE, test "x$configure_bluegene" != xno)
# Manually activate MPI, allow to specify directory containing MPI
#
# The Scali mpic++ wrapper leads to link problems, so we cannot use it.
# Instead, we use the plain C++ compiler and look for MPI in the scali
# installation directory, by default /opt/scali.
#
# To make this easy for the user, there are two mutually exclusive options:
# --with-mpi for non-Scali MPI
# --with-scali for Scali MPI
#
# H. E. Plesser, 2007-01-05
#
SLI_distributed="unset"
SLI_mpi_prefix="unset"
SLI_mpi_option="no"
SLI_scali_option="no"
if test "x$configure_bluegene" = xyes ; then
SLI_distributed=set
SLI_mpi_option=yes
if test "x$bluegene_architecture" = xL; then
AC_DEFINE(IS_BLUEGENE_L, 1, [Configuring for Blue Gene/L])
bluegene_dynamic_libs=no # no dynamic libs on BG/L
elif test "x$bluegene_architecture" = xP; then
AC_DEFINE(IS_BLUEGENE_P, 1, [Configuring for Blue Gene/P])
bluegene_dynamic_libs=yes
elif test "x$bluegene_architecture" = xQ ; then
AC_DEFINE(IS_BLUEGENE_Q, 1, [Configuring for Blue Gene/Q])
bluegene_dynamic_libs=yes
fi
else
AC_ARG_WITH(mpi,[ --with-mpi[[=directory]] Request compilation with MPI; optionally give directory with MPI installation.],
[
if test "$SLI_scali_option" = "yes" ; then
AC_MSG_ERROR([The --with-mpi and --with-scali options are mutually exclusive.])
fi
if test "$withval" = "yes" ; then
SLI_distributed="set"
SLI_mpi_option="yes"
elif test "$withval" != "no" ; then
SLI_distributed="set"
SLI_mpi_prefix=`echo ${withval} | sed 's/\/*$//'` # remove trailing slashes
SLI_mpi_option="yes"
fi
])
AC_ARG_WITH(scali, [ --with-scali[[=directory]] Request compilation with Scali MPI; optionally give directory with Scali [[/opt/scali]]],
[
if test "$SLI_mpi_option" = "yes" ; then
AC_MSG_ERROR([The --with-mpi and --with-scali options are mutually exclusive.])
fi
if test "$withval" = "yes" ; then
SLI_distributed="set"
SLI_mpi_prefix="/opt/scali"
SLI_scali_option="yes"
elif test "$withval" != "no" ; then
SLI_distributed="set"
SLI_mpi_prefix=`echo ${withval} | sed 's#\(.*\)/$#\1# ; q'`
SLI_scali_option="yes"
fi
])
fi
if test "x$configure_k" = xyes ; then
AC_DEFINE(IS_K, 1, [Configuring for K])
fi
# Use the MUSIC library to allow for simulator interoperation
#
AC_ARG_WITH(music,[ --with-music[[=directory]] Request the use of MUSIC. Optionally give the directory, where MUSIC is installed],
[
if test "$withval" != "no"; then
if test "$SLI_distributed" != "set"; then
AC_MSG_ERROR([MUSIC requires --with-mpi.])
else
AC_DEFINE(HAVE_MUSIC,1, [MUSIC support enabled?])
if test "$withval" = "yes"; then
MUSIC_LIBS="-lmusic"
MUSIC_INCLUDE=""
else
MUSIC_PATH="${withval}"
MUSIC_LIBS="-L${MUSIC_PATH}/lib -lmusic"
MUSIC_INCLUDE="-I${MUSIC_PATH}/include"
fi
fi
else
unset HAVE_MUSIC
fi
])
#
# Use libneurosim?
#
AC_CHECK_LIB(neurosim, libneurosim_version, HAVE_LIBNEUROSIM="auto", HAVE_LIBNEUROSIM="no")
if test "x$HAVE_LIBNEUROSIM" = xauto; then
LIBNEUROSIM_LIBS="-lneurosim"
LIBNEUROSIM_PY_LIBS="-lpyneurosim"
LIBNEUROSIM_INCLUDE=""
fi
AC_ARG_WITH(libneurosim, [ --with-libneurosim[[=directory]] Request the use of libneurosim. Optionally give the directory, where libneurosim is installed],
[
if test "$withval" != "no"; then
if test "$withval" != "yes"; then
if test "x$configure_bluegene" = xyes; then
LIBNEUROSIM_LIBS="${withval}/lib/libneurosim.a"
LIBNEUROSIM_PY_LIBS="${withval}/lib/libpyneurosim.a"
LIBNEUROSIM_INCLUDE="-I${withval}/include"
else
LIBNEUROSIM_LIBS="-L${withval}/lib -lneurosim"
LIBNEUROSIM_PY_LIBS="-lpyneurosim"
LIBNEUROSIM_INCLUDE="-I${withval}/include"
fi
fi
HAVE_LIBNEUROSIM="yes"
else
HAVE_LIBNEUROSIM="no"
fi
])
if test "x$HAVE_LIBNEUROSIM" != xno; then
AC_DEFINE(HAVE_LIBNEUROSIM, 1, [libneurosim support enabled?])
fi
# Select optimization mode
# note: see debugging mode selection
#
AC_ARG_WITH(optimize,[ --with-optimize[[=flags]] Select optimization level.],
[ SLI_debug="unset"
SLI_optimize="unset"
if test "$withval" != no; then
SLI_optimize="set"
if test "$withval" != "yes"; then
SLI_optimizeflags="$withval"
fi
fi])
# select debugging mode
# note: --with-debug -> withval = yes
# --without-debug -> withval = no
# --with-debug=foo -> withval = foo
#
AC_ARG_WITH(debug,[ --with-debug[[=flags]] Enable debugging information.],
[SLI_debug="unset"
if test "$withval" != "no"; then
SLI_debug="set"
## Debugging should be done without optimizations
SLI_optimize="unset"
if test "$withval" != "yes"; then
SLI_debugflags="$withval"
fi
fi])
# select warning level
#
AC_ARG_WITH(warnings,[ --with-warnings[[=flags]] Enable warnings.],
[SLI_warning="unset"
if test "$withval" != "no"; then
SLI_warning="set"
SLI_warningflags="$withval"
fi])
# Set the platform-dependent compiler flags based on the canonical
# host string. These flags are placed in AM_{C,CXX}FLAGS. If
# {C,CXX}FLAGS are given as environment variables, then they are
# appended to the set of automatically chosen flags. After
# {C,CXX}FLAGS have been read out, they must be cleared, since
# system-dependent defaults will otherwise be placed into the
# Makefiles. HEP 2004-12-20.
# Before we can determine the proper compiler flags, we must know
# which compiler we are using. Since the pertaining AC macros run the
# compiler and set CFLAGS, CXXFLAGS to system-dependent values, we
# need to save command line/enviroment settings of these variables
# first. AC_AIX must run before the compiler is run, so we must run it
# here.
# HEP 2004-12-21
# Compiler selection:
# - C compiler is chosen using AC_PROG_CC. C code occurs only in a
# few files in librandom. None of that code is MPI related.
#
# - C++ compiler is chosen as follows if distributed simulation is
# chosen:
#
# 1. If simulation is not distributed, use AC_PROC_CXX.
# 2. Otherwise, if no prefix is given, search for mpiCC or equivalent
# using AC_PROG_CXX(mpiCC).
# Search order can be influenced by setting PATH before calling
# configure.
# 3. If distributed simulation is requested and a prefix given, use
# standard compiler from AC_PROG_CXX and check for libraries in
# prefix directory.
# 4. Setting CXX overrides compiler selection brute force. AC_PROG_CXX
# handles this.
# 5. The final configuration is tested for if it works.
#
# HEP 2007-01-03
SLI_SAVE_CFLAGS=$CFLAGS
SLI_SAVE_CXXFLAGS=$CXXFLAGS
AC_AIX
AC_PROG_CC
if test "$SLI_distributed" = unset ; then
# no-distributed simulation
AC_PROG_CXX
else
if test "$SLI_scali_option" = "yes" ; then
# We cannot use the mpic++ wrapper for Scali, since it
# leads to a linker error due to "hidden symbol __dso_handle"
# on several systems. So we just choose the default C++ compiler
# and handle MPI via compiler flags later.
AC_PROG_CXX
else
# Non-Scali MPI. Here we assume that the wrappers work. If an
# explicit mpi-path is given, we add its bin to PATH first, then
# test, and then redefine the compiler variables to full path
# names. This is necessary since AC_PROG_CXX internally searches
# through the entire PATH; since AC_PROG_CXX contains many checks
# in addition to the search, we cannot simply write our own
# absolute-path version.
#
# Search for MPI C++ compiler wrapper:
# 1. Search for mpicxx, since mpicc and mpiCC are the same file
# on non-case-sensitive file systems (most OSX filesystems).
# 2. Search for mpiCC, which is MPICH standard
# 3. Do not look for Scali's mpic++, since the Scali compiler wrapper
# does not work.
if test "$SLI_mpi_prefix" = unset ; then
AC_PROG_CXX(mpicxx mpiCC)
else
SLI_SAVE_PATH=$PATH
# add /bin, avoiding duplicate //
mpi_bin=${SLI_mpi_prefix}/bin
PATH=${mpi_bin}:$PATH
AC_PROG_CXX(mpicxx mpiCC)
# If mpicxx or mpiCC are chosen, we check if they exists in the prefix
# path. If so, we add the prefix path. Otherwise, we leave CXX untouched.
if test $CXX = mpicxx -o $CXX = mpiCC ; then
if test -x ${mpi_bin}/$CXX ; then
CXX=$mpi_bin/$CXX
ac_ct_CXX=$CXX
ac_cv_prog_ac_ct_CXX=$CXX
fi
fi
PATH=$SLI_SAVE_PATH
fi
fi
fi
# further processing of distributed case below (see SLI_NEW_PATH_MPI)
##-- use ltdl library for dynamic loading of modules
## if not Cygwin or blue gene
AC_MSG_CHECKING([whether to build shared libraries])
if test "$host_os" != "cygwin"; then
if test "x$configure_bluegene" = xno ; then
BUILD_SHARED=yes
else
BUILD_SHARED=$bluegene_dynamic_libs
fi
else
BUILD_SHARED=no
SLI_debug="unset"
SLI_debugflags="-g"
SLI_optimize="set"
SLI_optimizeflags="-O"
fi
if test "x$BUILD_SHARED" != xno ; then
AC_ENABLE_SHARED ## do not build static libraries by default, use
AC_DISABLE_STATIC ## --enable-static to build them too
else
AC_DISABLE_SHARED
AC_ENABLE_STATIC
fi
AC_MSG_RESULT([$BUILD_SHARED])
SLI_SET_CFLAGS
CFLAGS=
SLI_SET_CXXFLAGS
CXXFLAGS=
# -------------------------------------------
# END Handle options
# -------------------------------------------
## search for the Doxygen executable
AC_PATH_PROG([DOXYGEN], [doxygen])
AM_CONDITIONAL(DOXYGEN_AVAILABLE, test x$DOXYGEN != x)
## see if dot from graphviz is available
## this is only needed to choose between
## Doxygen files, see doc/Makefile.am; HEP
AC_CHECK_PROG(HAVE_DOT, dot, "yes")
AM_CONDITIONAL(DOT_AVAILABLE, test x$HAVE_DOT = xyes)
## Configure C environment
AC_PROG_INSTALL
LT_PATH_LD
LT_CONFIG_LTDL_DIR([libltdl])
_LTDL_CONVENIENCE ## put libltdl into a convenience library
LT_INIT([dlopen]) ## use libtool
m4_pattern_allow([LT_LIBEXT]) ## supress false positive message by autoconf
AC_CONFIG_SUBDIRS(libltdl) ## also configure subdir containing libltdl
# This is a fix for a bug in Debian's libtool.
# See http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=526750
if echo $LIBLTDL | grep -s -q top_build_prefix; then
top_build_prefix=${PKGBUILDDIR}/
LIBLTDL=`eval echo $LIBLTDL`
fi
if test "x$BUILD_SHARED" != xno ; then
if test "x$LIBLTDL" != x ; then
AC_DEFINE(HAVE_LIBLTDL, 1, [Havel libltdl, can load dynamic modules])
fi
fi
#-- Stuff for GSL -----------------------------------------
# NOTE: MUST come BEFORE switching to AC_LANG_CPLUSPLUS !!!
# HEP 2001-08-07
# NOTE: Adding @GSL_CFLAGS@ to the AM_CPPFLAGS variable
# in Makefile.am will result in warnings about re-ordering
# the search path.
# HEP 2002-07-10
# GSL Related HAVE_* variables:
#
# HAVE_GSL indicates that some GSL release version is available
# (i.e., version 1.0 or higher)
# HAVE_GSL_X_Y indicates that the GSL is version >= X.Y
#
# Currently implemented:
# HAVE_GSL
# HAVE_GSL_1_2 # minimum requirement for GSL Random Generators
# HAVE_GSL_1_11 # fixes bug in ODE solvers, see #313 and #88
#
# Add further HAVE_GSL_MAJOR_MINOR if necessary according to scheme for
# HAVE_GSL_1_2 below.
#
# For each HAVE_GSL_X_Y, define also an automake conditional
# GSL_1_2_AVAILABLE to allow for conditional compilation. See example
# below, and librandom for an example of how to use it in Makefile.am.
#
# HEP 2002-08-21
AM_PATH_GSL(1.0, ac_have_gsl="yes", ac_have_gsl="no")
if test "$ac_have_gsl" != no ; then
AC_DEFINE(HAVE_GSL,1, [Is the GNU Science Library available (ver. >= 1.0)?])
AC_SUBST(HAVE_GSL)
AC_SUBST(GSL_LIBS)
AC_SUBST(GSL_CFLAGS)
AM_PATH_GSL(1.2, ac_have_gsl_1_2="yes", ac_have_gsl_1_2="no")
if test "x$ac_have_gsl_1_2" = xyes ; then
AC_DEFINE(HAVE_GSL_1_2, 1, [Is GSL Version >= 1.2?])
AM_PATH_GSL(1.11, ac_have_gsl_1_11="yes", ac_have_gsl_1_11="no")
if test "x$ac_have_gsl_1_11" = xyes ; then
AC_DEFINE(HAVE_GSL_1_11, 1, [Is GSL Version >= 1.11?])
else
ac_have_gsl_1_11="no"
fi
fi
else
unset GSL_LIBS
unset GSL_CFLAGS
unset GSL_VERSION
ac_have_gsl_1_2="no"
fi
# AM_CONDITIONAL must not be invoked conditionally
AM_CONDITIONAL(GSL_1_2_AVAILABLE, test x$ac_have_gsl_1_2 = xyes)
AM_CONDITIONAL(GSL_1_11_AVAILABLE, test x$ac_have_gsl_1_11 = xyes)
# C Inline stuff revised, HEP 2003-03-11
SLI_C_INLINE
if test "$ac_cv_c_inline" != no ; then
AC_DEFINE(HAVE_INLINE,1, [Do we have the inline macro in C?])
AC_SUBST(HAVE_INLINE)
fi
## --- end GSL STUFF -----------------------------------
# fails to find available functions if run with language
# set to C++; HEP 2003-03-13
AC_CHECK_FUNCS(popen pclose execv fork setenv sigaction)
#-- Set the language to C++
AC_LANG_CPLUSPLUS
# check if expm1 is available after we have switched to C++
AC_MSG_CHECKING([for expm1 ])
AC_LINK_IFELSE([AC_LANG_PROGRAM([[#include <math.h>]],
[[double x = ::expm1(0.1);]])],
ac_have_expm1="yes", ac_have_expm1="no")
if test "$ac_have_expm1" = yes ; then
AC_DEFINE(HAVE_EXPM1,1, ["Define if expm1() is available"])
fi
AC_MSG_RESULT($ac_have_expm1)
#-- Look for programs needed in the Makefile
AC_PROG_CXXCPP
AC_PATH_PROGS([MAKE],[gmake make],[make])
SLI_LIBS="$SLI_LIBS $LDFLAGS"
# Check for readline if not configuring for Blue Gene
if test "x$configure_bluegene" = "xno" ; then
AC_ARG_WITH([readline], [AS_HELP_STRING([--without-readline], [disable support for GNU readline])],
[],
[with_readline=yes])
if test "x$with_readline" != xno ; then
AC_CHECK_LIB(curses,tgetstr, SLI_LIBS="${SLI_LIBS} -lcurses",\
[AC_CHECK_LIB(termcap,tgetstr, SLI_LIBS="${SLI_LIBS} -ltermcap",\
[AC_CHECK_LIB(ncursesw,tgetstr, SLI_LIBS="${SLI_LIBS} -lncursesw",\
[AC_CHECK_LIB(ncurses,tgetstr, SLI_LIBS="${SLI_LIBS} -lncurses",\
[AC_MSG_ERROR([You need either libncurses, libcurses, or libtermcap to compile NEST.
])])])])])
AC_CHECK_LIB(readline, readline,\
[SLI_LIBS="${SLI_LIBS} -lreadline"\
AC_DEFINE(HAVE_READLINE, 1,[Use GNU libreadline])],\
[AC_MSG_ERROR([No readline found, --without-readline to disable])],\
[${SLI_LIBS}])
fi
else
AC_MSG_WARN("Skipping configuration of libreadline")
fi
# Test if to use multithreading with either OpenMP or POSIX threads
# JME 2011/09/29
AC_MSG_CHECKING(which threading library to use)
# Testing for OpenMP
AC_ARG_WITH([openmp], [AS_HELP_STRING([--without-openmp], [disable OpenMP multithreading])],
[with_openmp=$withval], # withval=yes, if configured with --with-openmp, no with --without-openmp
[with_openmp=default]) # withval would be yes, if configured without args
# Check if the OpenMP setup is usable
if test "$with_openmp" = yes || test "$with_openmp" = default; then
AC_MSG_RESULT(openmp)
if test "x$configure_bluegene" = xyes; then
# On Blue Gene, the macro AC_OPENMP is not defined, so we set the flags manually
OPENMP_CXXFLAGS="-qsmp=omp"
elif test "x$configure_k" = xyes; then
# On K, the macro AC_OPENMP is not defined, so we set the flags manually
OPENMP_CXXFLAGS="-Kopenmp"
else
m4_ifdef([AC_OPENMP], [AC_OPENMP])
if test "$OPENMP_CXXFLAGS" = ""; then
AC_MSG_ERROR([OpenMP not found, please use --without-openmp to disable.])
fi
fi
AM_CFLAGS="$AM_CFLAGS $OPENMP_CXXFLAGS"
AM_CXXFLAGS="$AM_CXXFLAGS $OPENMP_CXXFLAGS"
with_openmp=yes
else
AC_MSG_RESULT(none)
fi
AM_CONDITIONAL([LINK_OPENMP], test "x$with_openmp" = xyes)
# End of thread library processing
AC_ARG_WITH([python],
[AS_HELP_STRING([--without-python], [ignore the presence of Python and disable PyNEST])])
AS_IF([test "x$with_python" != "xno"],
[AM_PATH_PYTHON([2.6], [have_python=yes], [have_python=no])],
[have_python=no])
AS_IF([test "x$have_python" = "xyes"], [
PYTHON_INC=`$PYTHON -c 'import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_inc())'`
AC_CHECK_FILE(["${PYTHON_INC}/Python.h"], [PYNEST_CPPFLAGS="-I${PYTHON_INC}"], [have_python=no])
])
AC_MSG_CHECKING([whether to build PyNEST])
AS_IF([test "x$have_python" = "xyes"], [],
[AS_IF([test "x$with_python" = "xyes"],
[AC_MSG_ERROR([PyNEST requested, but Python not found])])])
AC_MSG_RESULT([$have_python])
AX_CHECK_COMPILE_FLAG([-fno-strict-aliasing],
[PYNEST_CXXFLAGS="-fno-strict-aliasing"], [])
# FIXME: this means that --without-python make will not recurse into pynest subdir
if test "x$have_python" = "xyes"; then
PYNEST_SUBDIR="pynest"
else
PYNEST_SUBDIR=""
fi
AM_CONDITIONAL([HAVE_PYTHON], [test "x$have_python" = "xyes"])
AC_SUBST([HAVE_PYTHON])
AC_SUBST([PYNEST_SUBDIR])
AC_SUBST([PYEXECDIR], ${pyexecdir})
AC_SUBST([PYTHON])
AC_SUBST([PYTHON_VERSION])
AC_SUBST([PYNEST_CPPFLAGS])
AC_SUBST([PYNEST_CXXFLAGS])
# is long long available for type representation and fully usable?
SLI_HAVE_LONG_LONG
# Check whether Alpha cxx includes *.h standard headers
# and C-style macros correctly
SLI_ALPHA_CXX_STD_BUG
# For a description of MPI detection, see comment on compiler selection.
if test "$SLI_distributed" = "set"; then
if test "x$configure_bluegene" = xyes ; then
BLUEGENE_MPI
else
SLI_NEW_PATH_MPI
fi
fi
# Makros M_E and M_PI
#
# !HAVE_M_E && HAVE_CMATH_MAKROS_IGNORED
# --> cmath needs to be included with #undef __PURE_CNAME
#
# HAVE_M_E || HAVE_CMATH_MAKROS_IGNORED --> M_E is present
# HAVE_M_PI || HAVE_CMATH_MAKROS_IGNORED --> M_PI is present
#
# Diesmann, 28.8.02
#
SLI_CXX_HAVE_M_E
SLI_CXX_HAVE_M_PI
SLI_CHECK_STATIC_TEMPLATE_DECLARATION
SLI_ALPHA_CMATH_MAKROS_IGNORED
SLI_ALPHA_CXX_SIGUSR_IGNORED
SLI_CHECK_ISTREAM_HEADER
SLI_CHECK_OSTREAM_HEADER
SLI_CHECK_SSTREAM_HEADER
SLI_CHECK_STL_VECTOR_CAPACITY_BASE_UNITY
SLI_CHECK_STL_VECTOR_CAPACITY_DOUBLING
SLI_CHECK_XLC_ICE_ON_USING
SLI_CHECK_EXITCODES
# ----------------------------------------------------
# Configure external modules to be linked into nest
# ----------------------------------------------------
# SLI_USER_MODULES collects module names for informative messages
SLI_USER_MODULES=""
# LINKED_USER_MODULES collects what needs to be added to LDADD
LINKED_USER_MODULES=""
AC_ARG_WITH(modules,[ --with-modules = external modules to be linked in],
[
if test "$withval" != no; then
for mod in $withval; do
LINKED_USER_MODULES=" $prefix/lib/nest/lib$mod.la"
SLI_USER_MODULES="$SLI_USER_MODULES $mod"
done
fi
])
# ---------------------------------------------------------------
# Configure directories to be built
# ---------------------------------------------------------------
# Classification of modules:
#
# - SLI_PUBLIC_MODULES
# statically linked, included in release
# - SLI_NONPUBLIC_MODULES
# statically linked, not included in release
#
# - SLI_PUBLIC_DYNMODULES
# dynamically linked, automatically loaded, included in release
# - SLI_NONPUBLIC_DYNMODULES
# dynamically linked, automatically loaded, not included in release
SLI_PUBLIC_MODULES="models precise topology"
SLI_NONPUBLIC_MODULES=""
SLI_PUBLIC_DYNMODULES=""
SLI_NONPUBLIC_DYNMODULES=""
if test "x$HAVE_LIBNEUROSIM" != xno; then
SLI_PUBLIC_MODULES="$SLI_PUBLIC_MODULES conngen"
fi
# Now go through all candidates and set up necessary variables and directories
# NOTE: We only include those modules that shall be loaded automatically.
# The _NOLOAD modules will only be included with the SUBDIRS below.
SLI_EXTRA_MODULE_CANDIDATES="$SLI_PUBLIC_MODULES $SLI_NONPUBLIC_MODULES"
# add dynmodules only if building shared libs
if test "x$BUILD_SHARED" != xno ; then
SLI_EXTRA_MODULE_CANDIDATES="$SLI_EXTRA_MODULE_CANDIDATES $SLI_PUBLIC_DYNMODULES $SLI_NONPUBLIC_DYNMODULES"
fi
# collect modules that shall be linked in
# these are modules from the NEST code base, ie, in the source directory
# and dependency tracking shall happen for these modules
LINKED_MODULES=""
SLI_EXTRA_MODULES=""
# collect directories for which AC_CONFIG_FILES need to be run
NEED_MAKEFILE_DIRS=""
# check all candidates: must contain Makefile.am
for mod in $SLI_EXTRA_MODULE_CANDIDATES; do
SLI_CHECK_SOURCE_FILE([$srcdir/$mod/Makefile.am], mod_exists="yes", mod_exists="no")
if test "x$mod_exists" = xyes; then
SLI_EXTRA_MODULES="$SLI_EXTRA_MODULES $mod"
NEED_MAKEFILE_DIRS="$NEED_MAKEFILE_DIRS $mod"
newmod="${PKGBUILDDIR}/${mod}/lib${mod}module.la"
LINKED_MODULES="$LINKED_MODULES $newmod"
# check if we need to create Makefiles in doc, examples, tests, pynest
for sdir in doc examples tests pynest; do
SLI_CHECK_SOURCE_FILE([$srcdir/$mod/$sdir/Makefile.am],
[NEED_MAKEFILE_DIRS="$NEED_MAKEFILE_DIRS $mod/$sdir"], [printf ""])
done
fi
done
# now build include and addmodule lines for use in (py)neststartup
# this is a bit redundant with the above, but here we look only at the
# static modules.
# The variables built here go to $PKGBUILDDIR/nest/static_modules.h via
# AC_CONFIG_FILES(). They should not be put into the Makefile using
# AC_SUBST().
INCLUDE_STATIC_MODULES=''
ADD_STATIC_MODULES=''
for mod in $SLI_PUBLIC_MODULES $SLI_NONPUBLIC_MODULES; do
modheader="$mod/${mod}module.h"
# get module name from the module's main header
Mod=`grep SLIModule ${srcdir}/${modheader} | sed -n 's/class *\(.*\) *:.*/\1/p' | tr -d ' '`
# the line breaks must remain in the strings below
SLI_CHECK_SOURCE_FILE([$srcdir/$mod/Makefile.am],
[INCLUDE_STATIC_MODULES="${INCLUDE_STATIC_MODULES}#include \"../${modheader}\"
"
ADD_STATIC_MODULES="${ADD_STATIC_MODULES} engine.addmodule(new nest::${Mod}(net));
"],
[printf ""])
done
# Now instruct configure to generate $PKGBUILDDIR/nest/static_modules.h,
# including the required headers and providing the add_static_modules()
# function.
# This way of doing it is quite a hack. We cannot use AC_CONFIG_FILES(), since
# we cannot AC_SUBST() the multiline variables we create here.
AC_CONFIG_COMMANDS([nest/static_modules.h],
[printf "#ifndef STATIC_MODULES_H\n#define STATIC_MODULES_H\n\n$acc_include_static_modules\n#include \"interpret.h\"\n#include \"network.h\"\n\nvoid add_static_modules(SLIInterpreter& engine, nest::Network& net)\n{\n$acc_add_static_modules}\n\n#endif\n" > nest/static_modules.h],
[acc_include_static_modules='$INCLUDE_STATIC_MODULES'
acc_add_static_modules='$ADD_STATIC_MODULES'])
# directories to include in distribution tarballs
SLI_CORE_LIBS="libnestutil sli librandom lib nestkernel $SLI_PUBLIC_MODULES $SLI_PUBLIC_DYNMODULES"
SLI_DIST_SUBDIRS="$SLI_CORE_LIBS nest conngen pynest"
SLI_SUBDIRS="$SLI_CORE_LIBS $SLI_EXTRA_MODULES nest"
# generate a list of absolute paths where to search for help files
for dir in $SLI_SUBDIRS; do
HELPDIRS="$HELPDIRS $PKGSRCDIR/$dir"
# Automatically include sli directory if it exists
if test -d "$PKGSRCDIR/$dir/sli" ; then
HELPDIRS="$HELPDIRS $PKGSRCDIR/$dir/sli"
fi
done
HELPDIRS=`echo $HELPDIRS | tr " " ":"`
INSTALL_HELP_LOG="$PKGBUILDDIR/install-help.log"
PKGDATADIR=$datadir/$PACKAGE
PKGDOCDIR=$datadir/doc/$PACKAGE
TESTSUITE_BASEDIR=`eval eval echo $PKGDOCDIR`
SLI_PREFIX=$prefix
# This hack resolves '${prefix}' in the variables
eval eval eval PKGDOCDIR_AS_CONFIGURED=$PKGDOCDIR
eval eval eval PKGDATADIR_AS_CONFIGURED=$PKGDATADIR
#-- Replace these variables in *.in
AC_SUBST(HAVE_ISTREAM)
AC_SUBST(HAVE_OSTREAM)
AC_SUBST(HAVE_SSTREAM)
AC_SUBST(HAVE_STL_VECTOR_CAPACITY_BASE_UNITY)
AC_SUBST(HAVE_STL_VECTOR_CAPACITY_DOUBLING)
AC_SUBST(HAVE_ERRNO_IGNORED)
AC_SUBST(HAVE_M_E)
AC_SUBST(HAVE_M_PI)
AC_SUBST(HAVE_CMATH_MAKROS_IGNORED)
AC_SUBST(HAVE_SIGUSR_IGNORED)
AC_SUBST(HAVE_READLINE)
AC_SUBST(HAVE_VAMPIR)
AC_SUBST(VAMPIR_LIBS)
AC_SUBST(VAMPIR_CFLAGS)
AC_SUBST(IS_BLUEGENE_L)
AC_SUBST(IS_BLUEGENE_P)
AC_SUBST(IS_BLUEGENE_Q)
AC_SUBST(IS_K)
AC_SUBST(SLI_MAJOR)
AC_SUBST(SLI_MINOR)
AC_SUBST(SLI_PATCHLEVEL)
AC_SUBST(SLI_VERSION)
AC_SUBST(SLI_PRGNAME)
AC_SUBST(SLI_PREFIX)
AC_SUBST(PKGSRCDIR)
AC_SUBST(PKGBUILDDIR)
AC_SUBST(PKGDATADIR)
AC_SUBST(PKGDATADIR_AS_CONFIGURED)
AC_SUBST(PKGDOCDIR)
AC_SUBST(PKGDOCDIR_AS_CONFIGURED)
AC_SUBST(TESTSUITE_BASEDIR)
AC_SUBST(SLI_EXITCODE_ABORT)
AC_SUBST(SLI_EXITCODE_SEGFAULT)
AC_SUBST(KERNEL)
AC_SUBST(HOST)
AC_SUBST(SED)
AC_SUBST(LD)
AC_SUBST(host_os)
AC_SUBST(host_cpu)
AC_SUBST(host_vendor)
AC_SUBST(AS)
AC_SUBST(CC)
AC_SUBST(CXX)
AC_SUBST(AR)
AC_SUBST(ARFLAGS)
AC_SUBST(CXX_AR)
AC_SUBST(AM_CXXFLAGS)
AC_SUBST(AM_CFLAGS)
AC_SUBST(OPENMP_CXXFLAGS)
AC_SUBST(MAKE)
AC_SUBST(MAKE_FLAGS)
AC_SUBST(SLI_SUBDIRS)
AC_SUBST(HELPDIRS)
AC_SUBST(INSTALL_HELP_LOG)
AC_SUBST(SLI_DIST_SUBDIRS)
AC_SUBST(SLI_THREAD_DEFS)
AC_SUBST(SLI_LIBS)
AC_SUBST(MPI_LIBS)
AC_SUBST(MPI_INCLUDE)
AC_SUBST(HAVE_MUSIC)
AC_SUBST(MUSIC_LIBS)
AC_SUBST(MUSIC_INCLUDE)
AC_SUBST(LIBNEUROSIM_LIBS)
AC_SUBST(LIBNEUROSIM_PY_LIBS)
AC_SUBST(LIBNEUROSIM_INCLUDE)
AC_SUBST(INCLTDL)
AC_SUBST(LIBLTDL)
AC_SUBST(HAVE_LIBLTDL)
AC_SUBST(LIBADD_DL)
AC_SUBST(LINKED_MODULES)
AC_SUBST(LINKED_USER_MODULES)
AC_CONFIG_HEADER(libnestutil/config.h)
AC_CONFIG_FILES(libnestutil/sliconfig.h)
AC_CONFIG_FILES(Makefile)
AC_CONFIG_FILES(doc/fulldoc.conf)
AC_CONFIG_FILES(doc/normaldoc.conf)
AC_CONFIG_FILES(doc/Makefile)
AC_CONFIG_FILES(examples/Makefile)
AC_CONFIG_FILES(examples/nest/Makefile)
AC_CONFIG_FILES(examples/sli/Makefile)
AC_CONFIG_FILES(testsuite/Makefile)
AC_CONFIG_FILES(libnestutil/Makefile)
AC_CONFIG_FILES(librandom/Makefile)
AC_CONFIG_FILES(sli/Makefile)
AC_CONFIG_FILES(lib/Makefile)
AC_CONFIG_FILES(nestkernel/Makefile)
AC_CONFIG_FILES(nest/Makefile)
AC_CONFIG_FILES(extras/nest-config)
AC_CONFIG_FILES(testsuite/do_tests.sh)
AC_CONFIG_FILES(extras/nest_vars.sh)
# conngen is special in that it might be omitted from build when
# libneurosim is not present, yet it always has to be configured
# in order to be distributed with the tarballs
#
AC_CONFIG_FILES(conngen/Makefile)
# In the following loop, we need to have
# a case statement and list all directories
# with Makefile.am explicitly. Otherwise,
# automake does not generate Makefile.in.
for dir in $NEED_MAKEFILE_DIRS; do
case $dir in
models)
AC_CONFIG_FILES(models/Makefile)
;;
precise)
AC_CONFIG_FILES(precise/Makefile)
;;
topology)
AC_CONFIG_FILES(topology/Makefile)
if test "x$have_python" = "xyes" ; then
AC_CONFIG_FILES(topology/setup.py)
fi
;;
topology/doc)