single_and_multiple_binning

A snakemake workflow for single- and multi- coverage binning

to run

snakemake --use-conda --cores 16

data

Currently, samples.tsv contains accessions from:

Stewart RD, Auffret MD, Warr A, Wiser AH, Press MO, Langford KW, Liachko I, Snelling TJ, Dewhurst RJ, Walker AW, Roehe R, Watson M. Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen. Nat Commun. 2018 Feb 28;9(1):870. doi: 10.1038/s41467-018-03317-6. PMID: 29491419; PMCID: PMC5830445.