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Open Data Access #1

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jenna-tomkinson opened this issue Sep 15, 2022 · 1 comment
Open

Open Data Access #1

jenna-tomkinson opened this issue Sep 15, 2022 · 1 comment
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@jenna-tomkinson
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@gwaybio For the CFReT data, do we know if there is anything binding the data to prevent it from being public.

If not, there are two options for where to put this data. Currently, before any removal of images, it is a little over 2GB with 990 images. We can:

  1. Add it to DVC:
  • I do not this as viable since I do not see in the documentation on their website that there is DropBox support (see https://dvc.org/doc/command-reference/remote)
  • There is a GitHub issue regarding the want for DropBox support and it shows that the issue was resolved but I am not confident that the issue was fully corrected since it states in the issue that there isn't much demand for it.
  1. Add to Figshare:
  • This seems like the better option but I am not sure about the process so I have a few questions:
    1. Is there a Way Lab figshare login or do I create my own?
    2. Is it like GitHub where there is a Way Science organization and then the datasets within it?

Based on the answers to my questions, we can then proceed in one direction.

@jenna-tomkinson jenna-tomkinson added the notes Information regarding processes for project label Sep 15, 2022
@gwaybio
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gwaybio commented Sep 15, 2022

Thanks for these notes @jenna-tomkinson !

  1. Sounds good. Let's not use DVC for this then. We should keep in mind that our pipelines would love to have DVC support for either Dropbox or OneDrive.
  2. Let's go with the Figshare option.

Is there a Way Lab figshare login or do I create my own?

Yes, please create your own account. Make sure to connect your ORCID.

Is it like GitHub where there is a Way Science organization and then the datasets within it?

No, not to my knowledge. I think it's good for you to double check me, however, in case things have changed since I last looked. (it's possible there is a thing called "collections", i am not sure)

The procedure is to create a personal account, create a new dataset, fill in the metadata information (feel free to open a new issue to document these items), and then publish (mint a DOI).

Part of the metadata procedure will be to name authors of the dataset. We should discuss authors prior to publishing the dataset.

do we know if there is anything binding the data to prevent it from being public.

I believe that we are all set to publish the data publicly. However, I will double check with Tim

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