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@WayScience

The Way Lab

The Way Lab at CU Anschutz

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  1. phenotypic_profiling phenotypic_profiling Public

    Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles

    Jupyter Notebook 2 3

  2. nf1_schwann_cell_painting_data nf1_schwann_cell_painting_data Public

    This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

    Jupyter Notebook 5 6

  3. pyroptosis_signature_image_profiling pyroptosis_signature_image_profiling Public

    This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

    Jupyter Notebook 2 3

  4. cellpainting_predicts_cardiac_fibrosis cellpainting_predicts_cardiac_fibrosis Public

    Image-based profiling and machine learning to predict failing vs. non-failing cardiac fibroblasts

    Jupyter Notebook 4 4

  5. coSMicQC coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    Python 7 3

  6. predicting-cell-injury-compounds predicting-cell-injury-compounds Public

    Processing cell-injury profiles using Pycytominer to generate selected features profiles for training a multi-class regression model to identify cellular injury.

    Jupyter Notebook 2

Repositories

Showing 10 of 73 repositories
  • Phenotypic_severity_and_variance Public

    Quantifying Zebrafish opercle bone morphology

    WayScience/Phenotypic_severity_and_variance’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 1 0 Updated Dec 5, 2024
  • cellpainting_predicts_cardiac_fibrosis Public

    Image-based profiling and machine learning to predict failing vs. non-failing cardiac fibroblasts

    WayScience/cellpainting_predicts_cardiac_fibrosis’s past year of commit activity
    Jupyter Notebook 4 CC0-1.0 4 2 0 Updated Dec 5, 2024
  • WayScience/GFF_3D_organoid_profiling_pipeline’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 2 0 0 Updated Dec 4, 2024
  • pediatric_cancer_atlas_profiling Public

    Image analysis and image-based profiling of pediatic cancer cell lines to extract morphological profiles.

    WayScience/pediatric_cancer_atlas_profiling’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 2 2 1 Updated Dec 3, 2024
  • coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    WayScience/coSMicQC’s past year of commit activity
    Python 7 BSD-3-Clause 3 17 2 Updated Dec 3, 2024
  • CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    WayScience/CytoDataFrame’s past year of commit activity
    Python 0 BSD-3-Clause 1 12 1 Updated Dec 3, 2024
  • WayScience/pairwise_compare’s past year of commit activity
    Python 0 CC-BY-4.0 0 2 0 Updated Dec 2, 2024
  • WayScience/gc-saguaro_udm_bucket’s past year of commit activity
    0 1 0 0 Updated Dec 2, 2024
  • WayScience/nuclear_speckles_analysis’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 1 1 2 Updated Nov 27, 2024
  • nf1_schwann_cell_morphology_signature Public

    This repository contains all the modules to split and train a binary classification model to predict NF1 null and wildtype genotype.

    WayScience/nf1_schwann_cell_morphology_signature’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 2 0 1 Updated Nov 27, 2024

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