SUREMI

Segmentations as Unified Representations for Medical Images

This project intends to preform the pipeline that image to segmentation to image in the field of medical images. By going through this cycle, we can do

Image translation
Image denoising
Data-driven diagnoisi
Image editing with human in the loop

Name		Name	Last commit message	Last commit date
Latest commit History 2,658 Commits
bnn		bnn
configs		configs
data_dir		data_dir
dataset		dataset
externel		externel
log_dir		log_dir
mae		mae
model		model
project_dir		project_dir
rq_transformer		rq_transformer
utils		utils
2nd_seg_uncertainty_map.py		2nd_seg_uncertainty_map.py
2nd_syn_uncertainty_map.py		2nd_syn_uncertainty_map.py
BTCV_v1_test.py		BTCV_v1_test.py
BTCV_v1_unet.py		BTCV_v1_unet.py
BTCV_v1_unet_unetr.py		BTCV_v1_unet_unetr.py
BTCV_v2_unetr_load.py		BTCV_v2_unetr_load.py
CS_VQ_v1.py		CS_VQ_v1.py
CS_VQ_v1_test.py		CS_VQ_v1_test.py
CS_VQ_v2.py		CS_VQ_v2.py
CS_VQ_v3.py		CS_VQ_v3.py
DictLearning.py		DictLearning.py
GCN_v1.py		GCN_v1.py
GCN_v10_residuals.py		GCN_v10_residuals.py
GCN_v10_residuals_test.py		GCN_v10_residuals_test.py
GCN_v11_classification3.py		GCN_v11_classification3.py
GCN_v11_classification3_test.py		GCN_v11_classification3_test.py
GCN_v1_test.py		GCN_v1_test.py
GCN_v2.py		GCN_v2.py
GCN_v3.py		GCN_v3.py
GCN_v3_test.py		GCN_v3_test.py
GCN_v6_alpha_noise.py		GCN_v6_alpha_noise.py
GCN_v7_pixelGAN.py		GCN_v7_pixelGAN.py
GCN_v7_pixelGAN_test.py		GCN_v7_pixelGAN_test.py
GCN_v8_pixelGAN_wdist.py		GCN_v8_pixelGAN_wdist.py
GCN_v8_pixelGAN_wdist_test.py		GCN_v8_pixelGAN_wdist_test.py
GCN_v9_pixelGAN_epsilon.py		GCN_v9_pixelGAN_epsilon.py
GCN_v9_pixelGAN_epsilon_test.py		GCN_v9_pixelGAN_epsilon_test.py
Grad_align.ipynb		Grad_align.ipynb
Iman_MRCT.py		Iman_MRCT.py
Iman_PETCT.py		Iman_PETCT.py
Iman_PETCT_test.py		Iman_PETCT_test.py
JN_532_UnetR_simple.py		JN_532_UnetR_simple.py
JN_532_baseline_test.py		JN_532_baseline_test.py
JN_532_mc_channel.py		JN_532_mc_channel.py
JN_532_mc_dim3_test.py		JN_532_mc_dim3_test.py
JN_532_mc_test.py		JN_532_mc_test.py
JN_Unet.py		JN_Unet.py
JN_UnetR.py		JN_UnetR.py
JN_UnetR_bdo.py		JN_UnetR_bdo.py
JN_UnetR_bdo_test_zoom.py		JN_UnetR_bdo_test_zoom.py
JN_UnetR_dim3_dropout.py		JN_UnetR_dim3_dropout.py
JN_UnetR_mT.py		JN_UnetR_mT.py
JN_UnetR_mc_dropout.py		JN_UnetR_mc_dropout.py
JN_UnetR_test.py		JN_UnetR_test.py
JN_UnetR_test_zoom.py		JN_UnetR_test_zoom.py
JN_Unet_MC.py		JN_Unet_MC.py
JN_Unet_basic_ensemble.py		JN_Unet_basic_ensemble.py
JN_Unet_bdo.py		JN_Unet_bdo.py
JN_Unet_bdo_distillation.py		JN_Unet_bdo_distillation.py
JN_Unet_bdo_test_zoom.py		JN_Unet_bdo_test_zoom.py
JN_Unet_channel_dropout.py		JN_Unet_channel_dropout.py
JN_Unet_channel_dropout_continue.py		JN_Unet_channel_dropout_continue.py
JN_Unet_mc_dim3.py		JN_Unet_mc_dim3.py
JN_Unet_mc_dropout.py		JN_Unet_mc_dropout.py
JN_Unet_test.py		JN_Unet_test.py
JN_Unet_test_zoom.py		JN_Unet_test_zoom.py
JN_dice_coef.py		JN_dice_coef.py
JN_ensemble_ensemble.py		JN_ensemble_ensemble.py
JN_mc_channel.py		JN_mc_channel.py
JN_mc_dim3_test.py		JN_mc_dim3_test.py
JN_mc_test.py		JN_mc_test.py
JN_plot.py		JN_plot.py
JN_test.py		JN_test.py
JN_test_532.py		JN_test_532.py
JN_test_Unet_UnetR.py		JN_test_Unet_UnetR.py
LICENSE		LICENSE
MacroDropout_v1.py		MacroDropout_v1.py
MacroDropout_v1_test.py		MacroDropout_v1_test.py
MacroDropout_v2_RD.py		MacroDropout_v2_RD.py
MacroDropout_v3_RDdim3.py		MacroDropout_v3_RDdim3.py
Probability_align.ipynb		Probability_align.ipynb
Probability_align_z80.ipynb		Probability_align_z80.ipynb
README.md		README.md
RadAdv_Theseus_v7_distillation_test.py		RadAdv_Theseus_v7_distillation_test.py
RadAdv_plot_stad_err.py		RadAdv_plot_stad_err.py
RadAdv_syn_AUC.py		RadAdv_syn_AUC.py
Theseus_v10_lrn4.py		Theseus_v10_lrn4.py
Theseus_v2.py		Theseus_v2.py
Theseus_v2_blockwise_test.py		Theseus_v2_blockwise_test.py
Theseus_v2_quan.py		Theseus_v2_quan.py
Theseus_v2_test.py		Theseus_v2_test.py
Theseus_v2_test_noise.py		Theseus_v2_test_noise.py
Theseus_v2_unetv3.py		Theseus_v2_unetv3.py
Theseus_v3_channel.py		Theseus_v3_channel.py
Theseus_v3_test.py		Theseus_v3_test.py
Theseus_v4_shuffle.py		Theseus_v4_shuffle.py
Theseus_v5_bdo.py		Theseus_v5_bdo.py
Theseus_v5_bdo_sym_padding.py		Theseus_v5_bdo_sym_padding.py
Theseus_v6_outlier_test.py		Theseus_v6_outlier_test.py

License

WeijieChen2017/SUREMI

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