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Write up how to guide for HPHI #39
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Need to create python enviroment: https://uoa-eresearch.github.io/eresearch-cookbook/recipe/2014/11/20/conda/ My command: But note that this doesn't work with BrainsForPublication 😭 So also need: There's a whole bunch of conda magic that has to happen here by the way, the most important point being that you must install 😕 Unfortunately this doesn't actually work - it does run, and it makes the brains but it doesn't save them (they're black squares!). I can run the commands from the root installation but not from my kwPython27 installation. I've sent an email to support to see if they have any ideas! |
If you want to use git you need to load the git version 2.13.2 module: This is in my bashrc file. If you have 2 factor authentication turned on then you can't use your password to push to github. You need to use your personal access token: https://help.github.com/articles/creating-a-personal-access-token-for-the-command-line/ I've saved this in my home directory in a folder called Finally, you can set github to remember your password in a cache for a certain amount of time so you don't have to enter your password every time: https://help.github.com/articles/caching-your-github-password-in-git/#platform-linux. I've set mine for 4 hours: I've set the git editor to nano with a line width of 72 to try to write better commit messages 😄
And I've also set up a gitmessage template from this gist by Richard Bronosky. |
Change the default settings for the prompt by adding the following to your
The last line will source an
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Here's a great guide for SLURM http://www.cism.ucl.ac.be/Services/Formations/slurm/2016/slurm.pdf I've written two commands:
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From HPHI set up a ssh key so you can easily link to the HPC by following the instructions here: http://www.thegeekstuff.com/2011/07/rsync-over-ssh-without-password/ |
NIIICE!!! Kirstie this is so useful 🌟👍 |
Sorry for not sending it to you earlier!! 😬 Glad it's helpful though! |
Note on module loading- if you're expecting software to be available and bash doesn't seem to recognise it, e.g Try checking you have the module loaded. Packages may be installed onto the HPHI system but not loaded for your session. information on modules in the HPHI is here: |
This could potentially be a protocols.io guide.
Apply for an account
Apply for an HPHI account.
⏲ wait for account to be created
Download and setup the required software
Choose the operating system you use (eg Windows 10, OS X Sierra etc) from the links on the left side of that page to find the specific instructions for your device.
Connect
wbic-gate.vss.cloud.private.cam.ac.uk
Check out the pictures at this help page to make sure you get all the right checkboxes filled in!
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