Census LTS Compatibility #77
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| name: Census LTS Compatibility # Compat test between Census package and LTS builds | |
| on: | |
| schedule: | |
| - cron: "30 1 * * *" | |
| workflow_dispatch: # used for debugging or manual validation | |
| jobs: | |
| python-compat-check: | |
| name: Python LTS compatibility check | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.11"] | |
| census-build-version: # Add additional LTS releases as they occur | |
| - "latest" | |
| - "stable" | |
| - "2023-07-25" | |
| - "2023-05-15" | |
| py-pkg-version: | |
| - "~=1.0.0" | |
| - "~=1.1.0" | |
| - "~=1.2.0" | |
| - "~=1.3.0" | |
| - "~=1.4.0" | |
| - "~=1.5.0" | |
| - "~=1.6.0" | |
| - "head-of-main" | |
| runs-on: ${{matrix.os}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies (including experimental) | |
| run: | | |
| python -m pip install -U pip setuptools wheel | |
| pip install -r ./api/python/cellxgene_census/scripts/requirements-dev.txt | |
| if [ {{matrix.cellxgene-census-version}} != "head-of-main" ]; then | |
| pip install -e ./api/python/cellxgene_census/[experimental] | |
| else | |
| pip install -U cellxgene_census[experimental]==${{ matrix.py-pkg-version }} | |
| fi | |
| - name: Test with pytest (API, main tests) | |
| run: | | |
| PYTHONPATH=. pytest -v -rP -m lts_compat_check ./api/python/cellxgene_census/tests/ --census_version ${{ matrix.census-build-version }} |