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Wu-Tong-Hearted/Recognition-of-multiscale-dense-gel-filament-droplet-field-in-digital-holography-with-Mo-U-net

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Filament-droplet Field Detection Using Mo-U-net

Paper: Recognition of multiscale dense gel filament-droplet field in digital holography with Mo-U-net

Github: https://github.com/Wu-Tong-Hearted/Recognition-of-multiscale-dense-gel-filament-droplet-field-in-digital-holography-with-Mo-U-net.git

Overall of this project

Structure of files

tree

  1. File Functions contains some support functions used in training including callbacks (some train strategies), metrics, test metrics (metrics_in_novel) and show_img.

  2. File data contains input img and ATM label. In this repository, we only give a small batch of data for valuation to decrease the file size.

  3. File logs/fit contains the tracks of training that were recorded during training. You can use "tensorboard" to check it.

  4. File model contains our Mo-U-net.

  5. File result contains predictions saved during training and models (in this repository, we only give our trained model weights instead of the whole model to decrease the file size). Pred_avi is just a demo.

  6. File test data contains part of our test EFI gained from five different experimental conditions.

  7. File train_log contains the trained weights of Mo-U-net. If you want to valuate the performance or just employ Mo-U-net for another use, please first check that you have loaded the right weights (unoverfitted) into the Mo-U-net. In our study, the best epoch for weights should be lower than 10 epochs.

Model

Model

Result

Over view of segmentation

overview

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