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01 participant inclusion.R

01 participant inclusion.R

 
 

02 16S data preprocessing.R

02 16S data preprocessing.R

 
 

03 diversity-tutorial.R

03 diversity-tutorial.R

 
 

04 co-abundance-groups.R

04 co-abundance-groups.R

 
 

05 DMM clustering.R

05 DMM clustering.R

 
 

06 linear mixed model.R

06 linear mixed model.R

 
 

07 metagen.R

07 metagen.R

 
 

08 prediction.R

08 prediction.R

 
 

09 code_multicate.R

09 code_multicate.R

 
 

10 RF_reg.R

10 RF_reg.R

 
 

11 combine_AUC_95%CI.R

11 combine_AUC_95%CI.R

 
 

README.md

README.md

 
 

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GMD_study: Workflow and code for: Ecological change of the gut microbiota during pregnancy and progression to dyslipidemia (manuscript under consideration).

The code for data preprocessiing, model built and valiation.

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