This is a collection of links to different datasets of Cnidarian and Ctenophore resources.
It is unlikely that this is a complete list so if I am missing something please let me know.
If this page has helped you to save time or you just like the idea of creating this resouces for the cnidarian community let me know at the next conference or buy me a virtual coffee.
Contributers:
- B. Gideon Bergheim, Özbek Group, University Heidelberg, Contact: email: gideon.bergheim@cos.uni-heidelberg.de | Twitter: @XyloGideon
Current number of species: 102
Last updated: 2022-12-19
Cnidaria
Anthozoa
Hexacorallia
Acropora
- Acropora acuminata (Genome Assembly, Predicted Genes)
- Acropora awi (Genome Assembly, Predicted Genes)
- Acropora cervicornis (Predicted Genes, Predicted Proteins)
- Acropora cytherea (Genome Assembly, Predicted Genes)
- Acropora digitifera (Genome Assembly, Predicted Genes)
- Acropora echinata (Genome Assembly, Predicted Genes)
- Acropora florida (Genome Assembly, Predicted Genes)
- Acropora gemmifera (Genome Assembly, Predicted Genes)
- Acropora hyacinthus (Genome Assembly, Predicted Genes)
- Acropora hyacintus (Predicted Genes, Predicted Proteins)
- Acropora intermedia (Genome Assembly, Predicted Genes)
- Acropora microphthalma (Genome Assembly, Predicted Genes)
- Acropora millepora (Predicted Genes, Predicted Proteins, Genome Assembly)
- Acropora muricata (Genome Assembly, Predicted Genes, Transcriptome Assembly, Predicted Proteins)
- Acropora nasuta (Genome Assembly, Predicted Genes)
- Acropora selago (Genome Assembly, Predicted Genes)
- Acropora tenuis (Genome Assembly, Predicted Genes, Predicted Proteins, Transcriptome Assembly)
- Acropora yongei (Genome Assembly, Predicted Genes)
Anthopleura
- Anthopleura elegantissima (Transcriptome Assembly)
Antipathozoanthus
- Antipathozoanthus obscurus (Genome Assembly)
- Antipathozoanthus remengesaui (Genome Assembly)
Astreopora
- Astreopora myriophthalma (Genome Assembly, Predicted Genes)
Bergia
- Bergia sp. 'catenularis' (Genome Assembly)
Churabana
- Churabana kuroshioae (Genome Assembly)
Entacmaea
- Entacmaea quadricolor (Genome Assembly)
Epizoanthus
- Epizoanthus fatuus (Genome Assembly)
- Epizoanthus planus (Genome Assembly)
- Epizoanthus rinbou (Genome Assembly)
- Epizoanthus scotinus (Genome Assembly)
- Epizoanthus stellaris (Genome Assembly)
Fungia
- Fungia scutaria (Transcriptome Assembly)
Heteractis
- Heteractis crispa (Genome Assembly)
- Heteractis magnifica (Genome Assembly)
Hydrozoanthus
- Hydrozoanthus gracilis (Genome Assembly)
Isaurus
- Isaurus tuberculatus (Genome Assembly)
Montastraea
- Montastraea cavernosa (Transcriptome Assembly, Genome Assembly)
Montipora
- Montipora aequituberculata (Predicted Genes, Predicted Proteins)
- Montipora cactus (Genome Assembly, Predicted Genes)
- Montipora capitata (Predicted Genes, Predicted Proteins, Genome Assembly)
- Montipora efflorescens (Genome Assembly, Predicted Genes)
- Montipora foliosa (Transcriptome Assembly, Predicted Proteins)
Nematostella
- Nematostella vectensis (Predicted Proteins, Predicted Genes, Genome Assembly)
Neozoanthus
- Neozoanthus uchina (Genome Assembly)
Orbicella
- Orbicella faveolata (Genome Assembly, SRA Library)
Palythoa
- Palythoa grandis (Genome Assembly)
- Palythoa heliodiscus (Genome Assembly)
Parazoanthus
- Parazoanthus atlanticus (Genome Assembly)
- Parazoanthus darwini (Genome Assembly)
- Parazoanthus swiftii (Genome Assembly)
Phymanthus
- Phymanthus crucifer (Genome Assembly)
Pocillopora
- Pocillopora damicornis (Transcriptome Assembly, Predicted Proteins)
- Pocillopora verrucosa (Transcriptome Assembly, Predicted Proteins)
Poicillopora
- Poicillopora acuta (Genome Assembly, Predicted Proteins, Predicted Genes)
- Poicillopora meandrina (Predicted Genes, Predicted Proteins, Genome Assembly)
Porites
- Porites asteroides (Predicted Genes)
- Porites australiensis (Genome Assembly, Predicted Genes)
- Porites compressa (Genome Assembly, Predicted Proteins, Predicted Genes)
Proites
- Proites asteroides (Predicted Proteins)
Scolanthus
- Scolanthus callimorphus (Genome Assembly, Predicted Genes, Predicted Proteins)
Seriatopora
- Seriatopora hystrix (Transcriptome Assembly)
Stichodactyla
- Stichodactyla helianthus (Genome Assembly)
- Stichodactyla mertensii (Genome Assembly)
Umimayanthus
- Umimayanthus chanpuru (Genome Assembly)
- Umimayanthus kanabou (Genome Assembly)
Zoanthus
- Zoanthus gigantus (Genome Assembly)
- Zoanthus sanctaehelenae (Genome Assembly)
- Zoanthus sociatus (Genome Assembly)
- Zoanthus solanderi (Genome Assembly)
Octocorallia
Phenganax
- Phenganax marumi (Genome Assembly)
- Phenganax stokvisi (Genome Assembly)
- Phenganax subtilis (Genome Assembly)
Plexaura
- Plexaura homomalla (Transcriptome Assembly)
- Plexaura kükenthali (Transcriptome Assembly)
Renilla
- Renilla reniformis (Genome Assembly, Predicted Genes)
Xenia
- Xenia spec. (Genome Assembly, Predicted Genes, Predicted Proteins, Single Cell Atlas)
Endocnidozoa
Myxozoa
Henneguya
- Henneguya salminicola (Genome Assembly)
Myxobolus
- Myxobolus honghuensis (Genome Assembly, Predicted Genes, Predicted Proteins)
- Myxobolus squamalis (Genome Assembly)
Medusozoa
Cubozoa
Alatina
- Alatina alata (Genome Assembly, Predicted Genes)
Chironex
- Chironex yamaguchii (Genome Assembly)
Morbakka
- Morbakka virulenta (Genome Assembly, Predicted Genes, Predicted Proteins)
Hydrozoa
Bythotiara
- Bythotiara depressa (Genome Assembly)
Cladonema
- Cladonema radiatum (Genome Assembly)
Clytia
- Clytia hemispaerica (Genome Assembly, Predicted Genes, Predicted Transcripts, Single Cell Atlas)
Craspedacusta
- Craspedacusta sowerbii (Genome Assembly)
Hydra
- Hydra viridissima (Genome Assembly, Predicted Genes, Predicted Proteins)
- Hydra vulgaris (Genome Assembly, Predicted Genes, Predicted Proteins, Transcript Assembly, Mito Chromosome, Single Cell Atlas)
Hydractinia
- Hydractinia echinata (Genome Assembly, Predicted Genes, Predicted Proteins, Transcriptome Assembly, Proteins, Mito Chromosome, Predicted miRNA)
- Hydractinia symbiolongicarpus (Genome Assembly, Predicted Genes, Predicted Proteins, Transcriptome Assembly, Proteins, Mito Chromosome, Predicted miRNA, Single Cell Atlas)
Scyphozoa
Aureilia
- Aureilia aurita (Genome Assembly, Predicted Genes, Predicted Proteins)
Aurelia
- Aurelia aurita(Atlantic Ocean) (Genome Assembly, Predicted Genes, Predicted Proteins)
- Aurelia aurita(Roscoff) (Genome Assembly, Predicted Genes, Predicted Proteins)
- Aurelia coerulea (Genome Assembly)
Cassiopea
- Cassiopea xamachana (Genome Assembly, Predicted Genes)
Chrysaora
- Chrysaora achlyos (Genome Assembly)
- Chrysaora chesapeakei (Genome Assembly)
- Chrysaora fuscescens (Genome Assembly)
Nemopilema
- Nemopilema nomurai (Genome Assembly)
Rhopilema
- Rhopilema esculentum (SRA Library)
Staurozoa
Calvadosia
- Calvadosia cruxmelitensis (Genome Assembly, Predicted Genes)
Haliclystus
- Haliclystus inabai (Genome Assembly)
Ctenophora
Tentaculata
Lobata
Mnemiopsis
- Mnemiopsis leidyi (Genome Assembly, Transcriptome Assembly, Predicted Genes, Predicted Proteins, Mito Chromosome, Single Cell Atlas)
References
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Libro et al. DOI: 10.1371/journal.pone.0081821
- Predicted Proteins Publication: Libro et al. DOI: 10.1371/journal.pone.0081821
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: DOI: nan
- Predicted Proteins Publication: DOI: nan
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Fuller, et al. DOI: 10.1126/science.aba4674
- Predicted Genes Publication: MOYA, et al. DOI: 10.1111/j.1365-294X.2012.05554.x
- Predicted Proteins Publication: MOYA, et al. DOI: 10.1111/j.1365-294X.2012.05554.x
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Proteins Publication: Han et al. DOI: 10.3390/ijms231911135
- Transcriptome Assembly Publication: Han et al. DOI: 10.3390/ijms231911135
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Predicted Genes Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
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- Genome Assembly Publication: Shinzato et al. DOI: 10.1093/molbev/msaa216
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- Predicted Proteins Publication: DOI: nan
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- Predicted Genes Publication: Yoshioka et al. DOI: 10.1186/s12862-022-02023-8
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- Predicted Genes Publication: Stephens, et al. DOI: 10.1093/gigascience/giac098
- Predicted Proteins Publication: Stephens, et al. DOI: 10.1093/gigascience/giac098
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- Transcriptome Assembly Publication: Han et al. DOI: 10.3390/ijms231911135
- Genome Assembly Publication: DOI: 6
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- Predicted Proteins Publication: DOI: nan
- Genome Assembly Publication: DOI: nan
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- Genome Assembly Publication: DOI: nan
- SRA Library Publication: Prada et al. DOI: 10.1016/j.cub.2016.09.039.
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- Predicted Proteins Publication: Stephens, et al. DOI: 10.1093/gigascience/giac098
- Genome Assembly Publication: Stephens, et al. DOI: 10.1093/gigascience/giac098
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- Predicted Proteins Publication: Chapman et al. DOI: 10.1038/nature08830
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- Transcript Assembly Publication: Petersen et al. DOI: 10.1073/pnas.1320965111
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- Mito Chromosome Publication: DOI: nan
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