Repurposing non-pharmacological interventions for Alzheimer's disease through link prediction on biomedical literature

This repository contains source code related to the paper

Xiao, Y., Hou, Y., Zhou, H. et al. Repurposing non-pharmacological interventions for Alzheimer's disease through link prediction on biomedical literature. Sci Rep 14, 8693 (2024). https://doi.org/10.1038/s41598-024-58604-8

Prerequisites

• Python 3.9

Directory Structure

• ./data directory contains input files
• ./preprocessing directory contains scripts for preparing data
• ./filtering directory contains scripts for filtering predications with BERT
• ./models directory contains scripts for knowledge graph embedding and link prediction
• ./predictions directory contains output files from link prediction model

Contact

Yongkang Xiao (xiao0290 (at) umn.edu) or Yu Hou (hou00127 (at) umn.edu)