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pointnet_util.py
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pointnet_util.py
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import os
import sys
BASE_DIR = os.path.dirname(os.path.abspath(__file__))
ROOT_DIR = os.path.dirname(BASE_DIR)
sys.path.append('/workspace/SOE-Net/tf_ops/sampling')
sys.path.append('/workspace/SOE-Net/tf_ops/grouping')
sys.path.append('/workspace/SOE-Net/tf_ops/3d_interpolation')
sys.path.append('/workspace/SOE-Net/tf_ops/pointSIFT_op')
sys.path.append(BASE_DIR)
sys.path.append(os.path.join(ROOT_DIR, 'utils'))
sys.path.append(os.path.join(ROOT_DIR, 'tf_ops/sampling'))
sys.path.append(os.path.join(ROOT_DIR, 'tf_ops/grouping'))
sys.path.append(os.path.join(ROOT_DIR, 'tf_ops/3d_interpolation'))
sys.path.append(os.path.join(ROOT_DIR, 'tf_ops/pointSIFT_op'))
from pointSIFT_op import pointSIFT_select, pointSIFT_select_four
from tf_sampling import farthest_point_sample, gather_point
from tf_grouping import query_ball_point, group_point, knn_point
from tf_interpolate import three_nn, three_interpolate
import tensorflow as tf
import numpy as np
import tf_util
def pointSIFT_group(radius, xyz, points, use_xyz=True):
idx = pointSIFT_select(xyz, radius)
grouped_xyz = group_point(xyz, idx) # (batch_size, npoint, 8, 3)
grouped_xyz -= tf.tile(tf.expand_dims(xyz, 2), [1, 1, 8, 1]) # translation normalization
if points is not None:
grouped_points = group_point(points, idx) # (batch_size, npoint, 8, channel)
if use_xyz:
new_points = tf.concat([grouped_xyz, grouped_points], axis=-1) # (batch_size, npoint, 8/32, 3+channel)
else:
new_points = grouped_points
else:
new_points = grouped_xyz
return xyz, new_points, idx, grouped_xyz
def pointSIFT_group_with_idx(xyz, idx, points, use_xyz=True):
grouped_xyz = group_point(xyz, idx) # (batch_size, npoint, 8, 3)
grouped_xyz -= tf.tile(tf.expand_dims(xyz, 2), [1, 1, 8, 1]) # translation normalization
if points is not None:
grouped_points = group_point(points, idx) # (batch_size, npoint, 8/32, channel)
if use_xyz:
new_points = tf.concat([grouped_xyz, grouped_points], axis=-1) # (batch_size, npoint, 8/32, 3+channel)
else:
new_points = grouped_points
else:
new_points = grouped_xyz
return xyz, new_points, idx, grouped_xyz
def pointSIFT_group_four(radius, xyz, points, use_xyz=True):
idx = pointSIFT_select_four(xyz, radius)
grouped_xyz = group_point(xyz, idx) # (batch_size, npoint, 32, 3)
grouped_xyz -= tf.tile(tf.expand_dims(xyz, 2), [1, 1, 32, 1]) # translation normalization
if points is not None:
grouped_points = group_point(points, idx) # (batch_size, npoint, 8/32, channel)
if use_xyz:
new_points = tf.concat([grouped_xyz, grouped_points], axis=-1) # (batch_size, npoint, 8/32, 3+channel)
else:
new_points = grouped_points
else:
new_points = grouped_xyz
return xyz, new_points, idx, grouped_xyz
def pointSIFT_group_four_with_idx(xyz, idx, points, use_xyz=True):
grouped_xyz = group_point(xyz, idx) # (batch_size, npoint, 8/32, 3)
grouped_xyz -= tf.tile(tf.expand_dims(xyz, 2), [1, 1, 32, 1]) # translation normalization
if points is not None:
grouped_points = group_point(points, idx) # (batch_size, npoint, 8/32, channel)
if use_xyz:
new_points = tf.concat([grouped_xyz, grouped_points], axis=-1) # (batch_size, npoint, 8/32, 3+channel)
else:
new_points = grouped_points
else:
new_points = grouped_xyz
return xyz, new_points, idx, grouped_xyz
def pointSIFT_module(xyz, points, radius, out_channel, is_training, bn_decay, scope='point_sift', bn=True, use_xyz=True, use_nchw=False):
data_format = 'NCHW' if use_nchw else 'NHWC'
with tf.variable_scope(scope) as sc:
# Grouping
new_xyz, new_points, idx, grouped_xyz = pointSIFT_group(radius, xyz, points, use_xyz)
# Point Feature Embedding
if use_nchw: new_points = tf.transpose(new_points, [0, 3, 1, 2])
for i in range(3):
new_points = tf_util.conv2d(new_points, out_channel, [1, 2],
padding='VALID', stride=[1, 2],
bn=bn, is_training=is_training,
scope='conv%d' % (i), bn_decay=bn_decay,
data_format=data_format)
# add fc
# new_points = tf_util.conv2d(new_points, out_channel, [1, 1],
# padding='VALID', stride=[1, 1],
# bn=bn, is_training=is_training,
# scope='conv_fc', bn_decay=bn_decay,
# data_format=data_format)
if use_nchw: new_points = tf.transpose(new_points, [0, 2, 3, 1])
# new_points = tf.squeeze(new_points, [2]) # (batch_size, npoints, mlp2[-1])
return new_xyz, new_points, idx
def pointSIFT_res_module(xyz, points, radius, out_channel, is_training, bn_decay, scope='point_sift', bn=True, use_xyz=True, same_dim=False, merge='add'):
data_format = 'NHWC'
with tf.variable_scope(scope) as sc:
# conv1
_, new_points, idx, _ = pointSIFT_group(radius, xyz, points, use_xyz=use_xyz)
for i in range(3):
new_points = tf_util.conv2d(new_points, out_channel, [1, 2],
padding='VALID', stride=[1, 2],
bn=bn, is_training=is_training,
scope='c0_conv%d' % (i), bn_decay=bn_decay,
data_format=data_format)
new_points = tf.squeeze(new_points, [2])
# conv2
_, new_points, idx, _ = pointSIFT_group_with_idx(xyz, idx=idx, points=new_points, use_xyz=use_xyz)
for i in range(3):
if i == 2:
act = None
else:
act = tf.nn.relu
new_points = tf_util.conv2d(new_points, out_channel, [1, 2],
padding='VALID', stride=[1, 2],
bn=bn, is_training=is_training,
scope='c1_conv%d' % (i), bn_decay=bn_decay,
activation_fn=act,
data_format=data_format)
new_points = tf.squeeze(new_points, [2])
# residual part..
if points is not None:
if same_dim is True:
points = tf_util.conv1d(points, out_channel, 1, padding='VALID', bn=bn, is_training=is_training, scope='merge_channel_fc', bn_decay=bn_decay)
if merge == 'add':
new_points = new_points + points
elif merge == 'concat':
new_points = tf.concat([new_points, points], axis=-1)
else:
print("ways not found!!!")
new_points = tf.nn.relu(new_points)
return xyz, new_points, idx
def sample_and_group(npoint, radius, nsample, xyz, points, knn=False, use_xyz=True):
'''
Input:
npoint: int32
radius: float32
nsample: int32
xyz: (batch_size, ndataset, 3) TF tensor
points: (batch_size, ndataset, channel) TF tensor, if None will just use xyz as points
knn: bool, if True use kNN instead of radius search
use_xyz: bool, if True concat XYZ with local point features, otherwise just use point features
Output:
new_xyz: (batch_size, npoint, 3) TF tensor
new_points: (batch_size, npoint, nsample, 3+channel) TF tensor
idx: (batch_size, npoint, nsample) TF tensor, indices of local points as in ndataset points
grouped_xyz: (batch_size, npoint, nsample, 3) TF tensor, normalized point XYZs
(subtracted by seed point XYZ) in local regions
'''
new_xyz = gather_point(xyz, farthest_point_sample(npoint, xyz)) # (batch_size, npoint, 3)
if knn:
_,idx = knn_point(nsample, xyz, new_xyz)
else:
idx, pts_cnt = query_ball_point(radius, nsample, xyz, new_xyz)
grouped_xyz = group_point(xyz, idx) # (batch_size, npoint, nsample, 3)
grouped_xyz -= tf.tile(tf.expand_dims(new_xyz, 2), [1,1,nsample,1]) # translation normalization
if points is not None:
grouped_points = group_point(points, idx) # (batch_size, npoint, nsample, channel)
if use_xyz:
new_points = tf.concat([grouped_xyz, grouped_points], axis=-1) # (batch_size, npoint, nample, 3+channel)
else:
new_points = grouped_points
else:
new_points = grouped_xyz
return new_xyz, new_points, idx, grouped_xyz
def sample_and_group_all(xyz, points, use_xyz=True):
'''
Inputs:
xyz: (batch_size, ndataset, 3) TF tensor
points: (batch_size, ndataset, channel) TF tensor, if None will just use xyz as points
use_xyz: bool, if True concat XYZ with local point features, otherwise just use point features
Outputs:
new_xyz: (batch_size, 1, 3) as (0,0,0)
new_points: (batch_size, 1, ndataset, 3+channel) TF tensor
Note:
Equivalent to sample_and_group with npoint=1, radius=inf, use (0,0,0) as the centroid
'''
batch_size = xyz.get_shape()[0].value
nsample = xyz.get_shape()[1].value
new_xyz = tf.constant(np.tile(np.array([0,0,0]).reshape((1,1,3)), (batch_size,1,1)),dtype=tf.float32) # (batch_size, 1, 3)
idx = tf.constant(np.tile(np.array(range(nsample)).reshape((1,1,nsample)), (batch_size,1,1)))
grouped_xyz = tf.reshape(xyz, (batch_size, 1, nsample, 3)) # (batch_size, npoint=1, nsample, 3)
if points is not None:
if use_xyz:
new_points = tf.concat([xyz, points], axis=2) # (batch_size, 16, 259)
else:
new_points = points
new_points = tf.expand_dims(new_points, 1) # (batch_size, 1, 16, 259)
else:
new_points = grouped_xyz
return new_xyz, new_points, idx, grouped_xyz
def pointnet_sa_module(xyz, points, npoint, radius, nsample, mlp, mlp2, group_all, is_training, bn_decay, scope, bn=True, pooling='max', knn=False, use_xyz=True, use_nchw=False):
''' PointNet Set Abstraction (SA) Module
Input:
xyz: (batch_size, ndataset, 3) TF tensor
points: (batch_size, ndataset, channel) TF tensor
npoint: int32 -- #points sampled in farthest point sampling
radius: float32 -- search radius in local region
nsample: int32 -- how many points in each local region
mlp: list of int32 -- output size for MLP on each point
mlp2: list of int32 -- output size for MLP on each region
group_all: bool -- group all points into one PC if set true, OVERRIDE
npoint, radius and nsample settings
use_xyz: bool, if True concat XYZ with local point features, otherwise just use point features
use_nchw: bool, if True, use NCHW data format for conv2d, which is usually faster than NHWC format
Return:
new_xyz: (batch_size, npoint, 3) TF tensor
new_points: (batch_size, npoint, mlp[-1] or mlp2[-1]) TF tensor
idx: (batch_size, npoint, nsample) int32 -- indices for local regions
'''
data_format = 'NCHW' if use_nchw else 'NHWC'
with tf.variable_scope(scope) as sc:
# Sample and Grouping
if group_all:
nsample = xyz.get_shape()[1].value
new_xyz, new_points, idx, grouped_xyz = sample_and_group_all(xyz, points, use_xyz)
else:
new_xyz, new_points, idx, grouped_xyz = sample_and_group(npoint, radius, nsample, xyz, points, knn, use_xyz)
# Point Feature Embedding
if use_nchw: new_points = tf.transpose(new_points, [0,3,1,2])
for i, num_out_channel in enumerate(mlp):
new_points = tf_util.conv2d(new_points, num_out_channel, [1,1],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='conv%d'%(i), bn_decay=bn_decay,
data_format=data_format)
if use_nchw: new_points = tf.transpose(new_points, [0,2,3,1])
# Pooling in Local Regions
if pooling=='max':
new_points = tf.reduce_max(new_points, axis=[2], keep_dims=True, name='maxpool')
elif pooling=='avg':
new_points = tf.reduce_mean(new_points, axis=[2], keep_dims=True, name='avgpool')
elif pooling=='weighted_avg':
with tf.variable_scope('weighted_avg'):
dists = tf.norm(grouped_xyz,axis=-1,ord=2,keep_dims=True)
exp_dists = tf.exp(-dists * 5)
weights = exp_dists/tf.reduce_sum(exp_dists,axis=2,keep_dims=True) # (batch_size, npoint, nsample, 1)
new_points *= weights # (batch_size, npoint, nsample, mlp[-1])
new_points = tf.reduce_sum(new_points, axis=2, keep_dims=True)
elif pooling=='max_and_avg':
max_points = tf.reduce_max(new_points, axis=[2], keep_dims=True, name='maxpool')
avg_points = tf.reduce_mean(new_points, axis=[2], keep_dims=True, name='avgpool')
new_points = tf.concat([avg_points, max_points], axis=-1)
# [Optional] Further Processing
if mlp2 is not None:
if use_nchw: new_points = tf.transpose(new_points, [0,3,1,2])
for i, num_out_channel in enumerate(mlp2):
new_points = tf_util.conv2d(new_points, num_out_channel, [1,1],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='conv_post_%d'%(i), bn_decay=bn_decay,
data_format=data_format)
if use_nchw: new_points = tf.transpose(new_points, [0,2,3,1])
new_points = tf.squeeze(new_points, [2]) # (batch_size, npoints, mlp2[-1])
return new_xyz, new_points, idx
def pointnet_sa_module_msg(xyz, points, npoint, radius_list, nsample_list, mlp_list, is_training, bn_decay, scope, bn=True, use_xyz=True, use_nchw=False):
''' PointNet Set Abstraction (SA) module with Multi-Scale Grouping (MSG)
Input:
xyz: (batch_size, ndataset, 3) TF tensor
points: (batch_size, ndataset, channel) TF tensor
npoint: int32 -- #points sampled in farthest point sampling
radius: list of float32 -- search radius in local region
nsample: list of int32 -- how many points in each local region
mlp: list of list of int32 -- output size for MLP on each point
use_xyz: bool, if True concat XYZ with local point features, otherwise just use point features
use_nchw: bool, if True, use NCHW data format for conv2d, which is usually faster than NHWC format
Return:
new_xyz: (batch_size, npoint, 3) TF tensor
new_points: (batch_size, npoint, \sum_k{mlp[k][-1]}) TF tensor
'''
data_format = 'NCHW' if use_nchw else 'NHWC'
with tf.variable_scope(scope) as sc:
new_xyz = gather_point(xyz, farthest_point_sample(npoint, xyz))
new_points_list = []
for i in range(len(radius_list)):
radius = radius_list[i]
nsample = nsample_list[i]
idx, pts_cnt = query_ball_point(radius, nsample, xyz, new_xyz)
grouped_xyz = group_point(xyz, idx)
grouped_xyz -= tf.tile(tf.expand_dims(new_xyz, 2), [1,1,nsample,1])
if points is not None:
grouped_points = group_point(points, idx)
if use_xyz:
grouped_points = tf.concat([grouped_points, grouped_xyz], axis=-1)
else:
grouped_points = grouped_xyz
if use_nchw: grouped_points = tf.transpose(grouped_points, [0,3,1,2])
for j,num_out_channel in enumerate(mlp_list[i]):
grouped_points = tf_util.conv2d(grouped_points, num_out_channel, [1,1],
padding='VALID', stride=[1,1], bn=bn, is_training=is_training,
scope='conv%d_%d'%(i,j), bn_decay=bn_decay, data_format=data_format)
if use_nchw: grouped_points = tf.transpose(grouped_points, [0,2,3,1])
new_points = tf.reduce_max(grouped_points, axis=[2])
new_points_list.append(new_points)
new_points_concat = tf.concat(new_points_list, axis=-1)
return new_xyz, new_points_concat
def pointnet_fp_module(xyz1, xyz2, points1, points2, mlp, is_training, bn_decay, scope, bn=True):
''' PointNet Feature Propogation (FP) Module
Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2, keep_dims=True)
norm = tf.tile(norm,[1,1,3])
weight = (1.0/dist) / norm
with tf.device('/cpu:0'):
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
new_points1 = tf.concat(axis=2, values=[interpolated_points, points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
new_points1 = tf_util.conv2d(new_points1, num_out_channel, [1,1],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='conv_%d'%(i), bn_decay=bn_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1