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[FIX][DOC] Fix broken links in ml-guide.md
and some minor changes in ScalaDoc. Author: Xiangrui Meng <meng@databricks.com> Closes apache#3601 from mengxr/SPARK-4575-fix and squashes the following commits: c559768 [Xiangrui Meng] minor code update ce94da8 [Xiangrui Meng] Java Bean -> JavaBean 0b5c182 [Xiangrui Meng] fix links in ml-guide
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