The final report for the project can be found here.
Github reps that were used:
2d Unet: https://github.com/cosmic-cortex/pytorch-UNet
3d Unet: https://github.com/wolny/pytorch-3dunet
psp net (pspnet was used like carcase and was modified for our task): https://github.com/Lextal/pspnet-pytorch/blob/master/pspnet.py
encoders: https://github.com/qubvel/segmentation_models.pytorch
encoders: https://github.com/Cadene/pretrained-models.pytorch#resnext
Spatial and channel-wise attention: https://github.com/LeeJunHyun/Image_Segmentation, https://github.com/ozan-oktay/Attention-Gated-Networks/blob/master/models/networks/unet_grid_attention_3D.py
FPN: https://github.com/qubvel/segmentation_models.pytorch
all of that githubs were modified for our tasks and our pipeline.