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This will only work for positive strands, negative strands will get the END of the read. Fix is easy, just need to decide if it is easier to swap out to htseq instead of re-writing.
The text was updated successfully, but these errors were encountered:
The code is here:
readsToWiggle.pyx
read_start = read.positions[0]
read_stop = read.positions[-1]
This will only work for positive strands, negative strands will get the END of the read. Fix is easy, just need to decide if it is easier to swap out to htseq instead of re-writing.
The text was updated successfully, but these errors were encountered: