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Add size_factor_key to relevant models #1321

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adamgayoso opened this issue Jan 31, 2022 · 0 comments · Fixed by #1334
Closed
4 tasks done

Add size_factor_key to relevant models #1321

adamgayoso opened this issue Jan 31, 2022 · 0 comments · Fixed by #1334
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@justjhong
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enhancement
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0.15.0

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@adamgayoso
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adamgayoso commented Jan 31, 2022 •
edited by justjhong

This would be in setup_anndata so that users can put a custom size factor in the likelihood. Setting this should make the output activation of px_rho to be a softplus, not a softmax

  • scVI
  • totalVI
  • MultiVI
  • scANVI
@adamgayoso adamgayoso changed the title Add size_factor_key to scVI Add size_factor_key to relevant models Feb 1, 2022
@adamgayoso adamgayoso added this to the 0.15.0 milestone Feb 1, 2022
This was referenced Feb 5, 2022
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Size Factor Field for SCVI, MULTIVI, SCANVI, TOTALVI scverse/scvi-tools
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@adamgayoso @justjhong