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A bug in tutorial #19

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HelloWorldLTY opened this issue Aug 18, 2023 · 0 comments
Open

A bug in tutorial #19

HelloWorldLTY opened this issue Aug 18, 2023 · 0 comments

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@HelloWorldLTY
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Hi, I found that there is a bug existing in the velovi tutorial:

image

I think the input should not be a tutorial, so I check "ext_uncertainty_df",

and it is a tuple, but its 1st term is a dataframe.

image

So I think the code to generate uncertainty should be:

for c in ext_uncertainty_df[0].columns:
    adata.obs[c + "_extrinisic"] = np.log10(ext_uncertainty_df[0][c].values)

Based on this approach, I can generate the uncertainty plot.

image

Thanks a lot.

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