Installation guide

Requirement

The system requires you have:

1. Access right to Computer center (台灣國網中心)
2. A Windows-based computer with administration access right

The whole installation process has two parts: 1) Computing Node computer center and 2) local installation

Part 1. Computer Center

1. Standard configuration as Computer center (台灣國網中心)

2. Upload the following files to your $HOME directory

   1. TCMAnalyzer2.py
   2. snap.py (Stanford's SNAP library https://snap.stanford.edu/ )
   3. snap.pyc (Stanford's SNAP library https://snap.stanford.edu/ )

3. Install Python library (for Python 2.6 台灣國網中心)

    pip install --user argparse
    pip install --user json
    pip install --user unicodecsv
    pip install --user bitarray
   

4. Upload metadata files to $HOME directory (please pick the file with latest date if multiple)

   1. metadata.DRUG.NAME.translation_shortform.20170625.tab
   2. metadata.DRUG.feature.TCM.summary.level123.QiFlavorMeri.20170621.csv

5. Create a working directory under $HOME directory

   • you may have $HOME/incoming for example
   • just leave the working directory empty

Part 2. Local installation

1. Standard installation of KNIME

2. Standard installation of Python 2.7 (3.x does not work)

3. Install Python library

    pip install pandas
    pip install numpyimport xml.etree.ElementTree as ET
    pip install networkx
    pip install grequests
    pip install json
    pip install urllib
    pip install unicodecsv
    pip install snap
    pip install requests
    pip install numpy
    pip install py2cytoscape
    pip install urllib
   

4. Download, install and append klink.exe in the PATH variable

5. Download all files in \src\LocalSetup