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No spatial sequence data #1

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liufuyan2016 opened this issue Apr 25, 2022 · 3 comments
Closed

No spatial sequence data #1

liufuyan2016 opened this issue Apr 25, 2022 · 3 comments

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@liufuyan2016
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I only have scRNA-seq and bulked RNA-seq. Could I use this tools ?
@ForwardYang98
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Do you mean just deconvolute the bulk RNA-seq data to single cell?

@liufuyan2016
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yes! Could be used ?

@ForwardYang98
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Of course you can. Bulk2Space could deconvolute the bulk RNA-seq data to single cell just via the deconvolution procedure, and you can get the deconvoluted single cell gene expression matrix in the output_data/../predata folder. We will update Bulk2Space and provide more application tutorials in the future, or you can just explore it by yourself right now.

@ccruizm ccruizm mentioned this issue Nov 30, 2022
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@liufuyan2016 @ForwardYang98