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@Zapit-Optostim

Zapit Optostim

Zapit Optostimulation System
README.md

Zapit Optostim

This is the home of the Zapit project: a scanner-based optostimulator system for head-fixed mouse behavioral tasks. Zapit is developed at the Sainsbury Wellcome Centre, UCL.

Click Here To See Our BioRxiv preprint

The Zapit repo hosts the MATLAB code running the scanner calibration GUI, stimulus creation GUI, and the MATLAB API for running experiments. Zapit also availble via the MATLAB FileExchange or through the AddOn Manager, accessible via the MATLAB Toolstrip.

See HERE for install instructions and documentation.

Running in Python

You can acccess the Zapit API via Python.

pip install zapit-Python-Bridge

Inspiration

This project was inspired by studies from the labs of Svoboda and Tank and Brody.

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  1. zapit zapit Public

    General purpose optostimulation system

    MATLAB 6 1

  2. zapit-Python-Bridge zapit-Python-Bridge Public

    Bridge for controlling zapit via Python

    Python 1

  3. zapit_appdesigner zapit_appdesigner Public

    MATLAB AppDesigner files for editing the view classes

    MATLAB

  4. zapit_CAD zapit_CAD Public

    CAD models associated with Zapit

Repositories

Showing 8 of 8 repositories
  • zapit Public

    General purpose optostimulation system

    Zapit-Optostim/zapit’s past year of commit activity
    MATLAB 6 LGPL-2.1 1 51 0 Updated Jun 21, 2024
  • .github Public
    Zapit-Optostim/.github’s past year of commit activity
    0 0 0 0 Updated Jun 4, 2024
  • zapit_CAD Public

    CAD models associated with Zapit

    Zapit-Optostim/zapit_CAD’s past year of commit activity
    0 BSD-3-Clause 0 4 0 Updated May 24, 2024
  • zapit-tcp-bridge Public

    Bridge for controlling zapit via a TCP connection

    Zapit-Optostim/zapit-tcp-bridge’s past year of commit activity
    MATLAB 0 LGPL-2.1 0 3 0 Updated May 10, 2024
  • zapit-Python-Bridge Public

    Bridge for controlling zapit via Python

    Zapit-Optostim/zapit-Python-Bridge’s past year of commit activity
    Python 0 BSD-3-Clause 1 5 0 Updated Feb 15, 2024
  • AllenAtlasTopDown Public

    Top-down view of the Allen Atlas in stereotaxic coords

    Zapit-Optostim/AllenAtlasTopDown’s past year of commit activity
    MATLAB 4 LGPL-3.0 0 1 0 Updated Feb 6, 2024
  • ZapitSfNPoster Public

    Zapit SfN Poster

    Zapit-Optostim/ZapitSfNPoster’s past year of commit activity
    0 Unlicense 0 0 0 Updated Nov 6, 2023
  • zapit_appdesigner Public

    MATLAB AppDesigner files for editing the view classes

    Zapit-Optostim/zapit_appdesigner’s past year of commit activity
    MATLAB 0 LGPL-2.1 0 0 0 Updated Jan 25, 2023

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