A package for processing voxelwise descriptors for connectomics, with a special focus on predictions of synaptic connectivity.
pip install synaptor
pip install git+https://github.com/ZettaAI/Synaptor
If python-igraph fails to install, you may need to install some required libraries. Try
apt install libigraph0-dev libxml2-dev zlib1g-dev
Synaptor produces a dataframe with each segment described by a row:
cleft_segid - ID of the cleft segment described by the row.
centroid_[xyz]_vx - The voxel coordinate of the segment.
bbox_begin_[xyz] - The voxel coordinate of the (inclusive) beginning of the segment's bounding box.
bbox_end_[xyz] - The voxel coordinate of the (exclusive) end of the segment's bounding box.
presyn_segid - The ID of the presynaptic segment within the "base" segmentation used.
postsyn_segid - The ID of the postsynaptic segment within the "base" segmentation used.
presyn_[xyz]_vx - The voxel coordinate of the presynaptic "anchor point" for segmentation changes.
postsyn_[xyz]_vx - The voxel coordinate of the postsynaptic "anchor point" for segmentation changes.
vx_count - The size of the segment in voxels.
centroid_[xyz]_nm The centroid coordinate scaled by the supplied voxel resolution.
- Nicholas Turner <nturner@zetta.ai>