An individual human stemness index for single-cell samples.
To install the StemSC, install from github using devtools
library(devtools)
install_github("Zhao-Wenyuan/StemSC")
Or you can download the .ZIP file and and unzip it.
install.packages("StemSC",repos = NULL,type="source")
#The "StemSC" should be combined with the absolute path.
library(StemSC)
data(example)
stemness=StemSC(Exp)
The example is the gene expression values (RPKM) of embryonic stem cells from dataset GSE85066.
Exp, a dataframe with gene expression values (RPKM) where columnnames are cells and rownames are Entrez gene IDs (you can check the example for reference).The within-sample standardization does not change the results, such as TPM and log transformation.
Please use the following citation:
https://github.com/Zhao-Wenyuan/StemSC
Please don't hesitate to address comments/questions/suggestions regarding this R package to: zhaowenyuan@ems.hrbmu.edu.cn