Create awk_script_qualityFiltering_SAM

ZoubeidiLab · Apr 7, 2022 · f7bfcbb · f7bfcbb
commit f7bfcbb
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/awk_script_qualityFiltering_SAM b/awk_script_qualityFiltering_SAM
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+egrep -w 'NM:i:[0-5]|@SQ|@PG' fileName.sam | awk '($5 == 60 && $2 < 2048) || $1~/^@/' > fileName-Q60.sam