[2.0.0] - 2021-06-21

Added

• list of all commandline options
• example for a greedy DENTIST configuration
• guide on how to release a new version of DENTIST (work in progress)

Changed

• release v1.0.1 contained breaking changes so this release updates to v2.0.0:
  the changes to the workflow make it incompatible with old configuration files
• moved Docker image to Ubuntu and reduced size
• improved compatibility of pre-compiled binaries by compiling on Ubuntu 16.04
• sort read IDs in insertions.db to make AGP and BED files comparable
• allow --min-*-coverage in dentist mask-repetitive-regions to be zero
• avoid confusing message about pre-fetching the Singularity image if possible
• updated README

Removed

• unused argument for process-pile-ups
• replaced Dockerfile.build-release by regular Dockerfile

Fixed

• fixed ProtectedOutputException bug that was listed in the Troubleshooting
  section of the README
• sort LAS files for daccord without chaining
• buffer overflow in propagate-mask
• adjust read-coverage in example configuration to actual coverage in the
  example dataset