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Make estimate read error rate configurable #28

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a-ludi opened this issue May 24, 2018 · 0 comments
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Make estimate read error rate configurable #28

a-ludi opened this issue May 24, 2018 · 0 comments
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enhancement New feature or request
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Pre-Talk in Jena

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a-ludi commented May 24, 2018

There should be an option to specify the expected error rate which is then used to calculate the -e option to daligner or damapper.
@a-ludi a-ludi added this to the Pre-Talk in Jena milestone May 24, 2018
@a-ludi a-ludi self-assigned this May 24, 2018
@a-ludi a-ludi added the enhancement New feature or request label May 24, 2018
a-ludi added a commit that referenced this issue May 25, 2018
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make estimate read error rate configurable
dcf0ff1 
- fix `referenceErrorRate` to contain the actual error rate
- add option `--reads-error`
- calculate value for `-e` in `daligner`/`damapper` calls

issue #28
a-ludi added a commit that referenced this issue May 25, 2018
@a-ludi
adjust integration tests
92125c4 
- use `--*-error` options
- improved "gap filled" test that allows some errors
- new test data `v3`

issue #28
@a-ludi a-ludi closed this as completed May 28, 2018
@a-ludi a-ludi mentioned this issue May 28, 2018
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