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Require minimum extension length #32

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a-ludi opened this issue May 25, 2018 · 0 comments
Open
1 of 2 tasks

Require minimum extension length #32

a-ludi opened this issue May 25, 2018 · 0 comments
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a-ludi commented May 25, 2018 •
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Extensions with only a few bases are likely an artefact of imperfect alignments. Thus, they should be excluded.

Tasks

  • Calculate confidence interval for displacement due to given error rates of reference and reads.
  • Do not insert extensions that are improbable short after consensus.
@a-ludi a-ludi self-assigned this May 25, 2018
@a-ludi a-ludi added enhancement New feature or request question Further information is requested labels May 25, 2018
a-ludi added a commit that referenced this issue May 28, 2018
@a-ludi
do not insert short extensions
59def13 
- fixed value `minExtensionLength` to determine shortness of an
  extension

issue #32
@a-ludi a-ludi mentioned this issue May 28, 2018
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@a-ludi a-ludi added this to the Pre-Talk in Jena milestone May 29, 2018
a-ludi added a commit that referenced this issue May 29, 2018
@a-ludi
do not insert short extensions
a34103e 
- fixed value `minExtensionLength` to determine shortness of an
  extension

issue #32
@a-ludi a-ludi added this to Selected in Master Board Jun 7, 2018
@a-ludi a-ludi moved this from Selected to Backlog in Master Board Jun 25, 2018
@a-ludi a-ludi removed this from the Pre-Talk in Jena milestone Jun 25, 2018
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