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Fix masking of repetitive regions #36

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a-ludi opened this issue May 28, 2018 · 1 comment
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Fix masking of repetitive regions #36

a-ludi opened this issue May 28, 2018 · 1 comment
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a-ludi commented May 28, 2018

Currently, the masking is not working like it should be. Given a set of masked region R, the minimum anchor length l_min, the alignment region r(a) the current implementation filters the alignment a iff

implemented formula

But we expect it to compute

expected formula
@a-ludi a-ludi added the bug Something isn't working label May 28, 2018
@a-ludi a-ludi added this to the Pre-Talk in Jena milestone May 28, 2018
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a-ludi commented May 28, 2018

This issue requires issue #34 to be completed.

@a-ludi a-ludi self-assigned this May 28, 2018
a-ludi added a commit that referenced this issue May 29, 2018
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implement union_ and difference for Region[]
b6eb298 
issue #36
a-ludi added a commit that referenced this issue May 29, 2018
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fix masking of repetitive regions
06e528d 
- additionally integrated this filtering into the filter pipeline

issue #36
@a-ludi a-ludi closed this as completed May 29, 2018
@a-ludi a-ludi mentioned this issue Jun 1, 2018
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