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mkdocs.yml
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mkdocs.yml
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# Project information
site_name: pyBioTools
site_description: pyBioTools is a collection of python tools to manipulate biological sequences
site_author: Adrien Leger
site_url: https://adrienleger.com/pyBioTools/
# Repository
repo_name: 'a-slide/pyBioTools'
repo_url: https://github.com/a-slide/pyBioTools
# Copyright
copyright: Copyright © 2020 Adrien Leger
# Navigation menu
nav:
- Home: index.md
- Installation instructions: installation.md
- Usage:
- Alignment:
- CLI : usage/Alignment/CLI.ipynb
- API : usage/Alignment/API.ipynb
- Fastq:
- CLI : usage/Fastq/CLI.ipynb
- API : usage/Fastq/API.ipynb
- Seqsum:
- CLI : usage/Seqsum/CLI.ipynb
- API : usage/Seqsum/API.ipynb
- Citing: citing.md
- Contributing Guidelines: contributing.md
- Code of conduct: code_of_conduct.md
- Licence: licence.md
- Changelog: changelog.md
# Theme customization
theme:
name: 'material'
highlightjs: true
font: false
markdown_extensions:
- admonition
- codehilite
- pymdownx.betterem:
smart_enable: all
- pymdownx.caret
- pymdownx.critic
- pymdownx.details
- pymdownx.emoji:
emoji_generator: !!python/name:pymdownx.emoji.to_svg
- pymdownx.inlinehilite
- pymdownx.magiclink:
repo_url_shorthand: true
user: a-slide
repo: pyBioTools
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.superfences
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.tilde
plugins:
- mknotebooks
- exclude:
glob:
- "usage/output/*"
- "usage/data/*"