a1aks/xml_to_csv
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XML TO CSV The Script is created by Akshay Bhat. Date: 05/04/2012. The Script can only be run on the console. (As of Now) The following are the requirements for running the script. Dependencies: Rubygems: sudo gem update --http-proxy --system NB: If you get an error saying "Nothing to Update" Then do the following. 1. sudo gem install --http-proxy rubygems-update 2. update_rubygems Nokogiri: sudo gem install nokogiri Fastercsv: sudo gem install fastercsv Now from the command line use the following: ruby xml_2_csv.rb "file.xml" "test.csv" This is a script that uses input xml files that are produced by Illumina Casava v.1.7 and then converts it to csv format for further usage in Bioinformatics analysis.
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Converter for Illumina Casava v1.7
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