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Update netwas.rst
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aaronkw committed Aug 21, 2017
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Expand Up @@ -19,6 +19,38 @@ NetWAS requires as input a GWAS result file, with per-gene p-values. We suggest
* `FORGE <https://github.com/inti/FORGE>`_: multivariate calculation of gene-wide p-values from Genome-Wide Association Studies Authors and Affiliations
* `PLINK/SEQ <https://atgu.mgh.harvard.edu/plinkseq/index.shtml>`_: a library for the analysis of genetic variation data


NetWAS Results
---------------------------------------
When a NetWAS analysis finishes, a result file will be emailed to the provided address and/or can be accessed at a given URL. An example file is show below: ::

##################################################################################
# HumanBase NetWAS Analysis Results
#
# Job id: d81a3872-3de8-4c83-a28c-ea4267f72870
# Job title:
# Email: aaronkw@gmail.com
# Created: 2017-08-18 17:26:48 EDT
# GWAS file: bmi-2012.out.txt
# GWAS format: vegas
# Tissue: adipose_tissue
# P-value: 0.01
#
# NetWAS citation:
# Greene CS*, Krishnan A*, Wong AK*, Ricciotti E, Zelaya RA, Himmelstein DS, Zhang
# R, Hartmann BM, Zaslavsky E, Sealfon SC, Chasman DI, FitzGerald GA, Dolinski K,
# Grosser T, Troyanskaya OG. (2015). Understanding multicellular function and
# disease with human tissue-specific networks. Nature Genetics. 10.1038/ng.3259w.
##################################################################################
KRT6B -1 0.561327
EMP1 -1 0.541169
ZBTB41 -1 0.503238
PNPLA8 -1 0.454396
ITGB4 -1 0.440985
........



Examples
---------------------------------------

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