Skip to content

Commit

Permalink
Merge pull request #2 from aaronkw/deepsea_feature_file
Browse files Browse the repository at this point in the history
Add link to DeepSEA supplemental feature table reference
  • Loading branch information
aaronkw committed Jan 30, 2020
2 parents 88fb1aa + 8c26055 commit d48b7c3
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions docs/deepsea.rst
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,8 @@ DeepSEA is described in the following manuscript:

Jian Zhou, Olga G. Troyanskaya. **Predicting the Effects of Noncoding Variants with Deep learning-based Sequence Model.** Nature Methods (2015).

To determine if certain features (ie. transcription factors, marks, or cell types) are present/accounted for in the model, refer to the `supplemental feature table <https://s3-us-west-2.amazonaws.com/humanbase-dev/deepsea/examples/41588_2019_420_MOESM9_ESM.csv>`_ which has all the profiles used to train DeepSEA.

Input
------------

Expand Down

0 comments on commit d48b7c3

Please sign in to comment.