feat(gtdb/tree): Added R207 tree.

aaronmussig · Jul 15, 2022 · 24b2377 · 24b2377
1 parent 051ca48
commit 24b2377
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diff --git a/magna/gtdb/metadata.py b/magna/gtdb/metadata.py
@@ -129,7 +129,7 @@ class GtdbMetadataR207Bac(GtdbMetadata):
     """The bacterial metadata (release 207)."""
     source = 'https://data.gtdb.ecogenomic.org/releases/release207/207.0/bac120_metadata_r207.tar.gz'
     path = os.path.join(MAGNA_DIR, 'dataset', 'gtdb', 'metadata', 'bac120_metadata_r207.feather')
-    md5 = 'fb1911b5aa12c098fd25387c4296b157'
+    md5 = 'f46495420129e04010288321110b15eb'
 
     def __init__(self):
         super().__init__(self.source, self.path, self.md5)

diff --git a/magna/gtdb/tree.py b/magna/gtdb/tree.py
@@ -81,3 +81,23 @@ class GtdbTreeR202Bac(GtdbTree):
 
     def __init__(self):
         super().__init__(self.source, self.path, self.md5)
+
+
+class GtdbTreeR207Arc(GtdbTree):
+    """The GTDB archaeal tree (release 207)."""
+    source = 'https://data.gtdb.ecogenomic.org/releases/release207/207.0/ar53_r207.tree'
+    path = os.path.join(MAGNA_DIR, 'dataset', 'gtdb', 'tree', 'ar53_r207.tree')
+    md5 = 'e6e493882a067e18d1d6fd50be89c047'
+
+    def __init__(self):
+        super().__init__(self.source, self.path, self.md5)
+
+
+class GtdbTreeR207Bac(GtdbTree):
+    """The GTDB bacterial tree (release 207)."""
+    source = 'https://data.gtdb.ecogenomic.org/releases/release207/207.0/bac120_r207.tree'
+    path = os.path.join(MAGNA_DIR, 'dataset', 'gtdb', 'tree', 'bac120_r207.tree')
+    md5 = '12fab8ba201d200aada9c8d61dafda4b'
+
+    def __init__(self):
+        super().__init__(self.source, self.path, self.md5)