fix(PFAM/TIGRFAM): Adjust columns in tophit file, fix data type.

aaronmussig · May 5, 2022 · c63fc52 · c63fc52
1 parent 62387d7
commit c63fc52
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/magna/pfam/__init__.py b/magna/pfam/__init__.py
@@ -43,9 +43,9 @@ def read_pfam_tophit(path: str) -> pd.DataFrame:
     """
     dtype = {
         'seq_id': object,
-        'pfam_acc': object,
+        'marker': object,
         'e_value': np.float64,
-        'bit_score': np.uintc,
+        'bit_score': np.float64,
     }
     lines = list()
     with open(path, 'r') as f:

diff --git a/magna/tigrfam/__init__.py b/magna/tigrfam/__init__.py
@@ -49,9 +49,9 @@ def read_tigrfam_tophit(path: str) -> pd.DataFrame:
     """
     dtype = {
         'seq_id': object,
-        'pfam_acc': object,
+        'marker': object,
         'e_value': np.float64,
-        'bit_score': np.uintc,
+        'bit_score': np.float64,
     }
     lines = list()
     with open(path, 'r') as f: